bnlearn

R package bnlearn: Bayesian network structure learning, parameter learning and inference. Bayesian network structure learning, parameter learning and inference. This package implements constraint-based (GS, IAMB, Inter-IAMB, Fast-IAMB, MMPC, Hiton-PC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing and Tabu Search) and hybrid (MMHC and RSMAX2) structure learning algorithms for both discrete and Gaussian networks, along with many score functions and conditional independence tests. The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are also implemented. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing, simple and advanced plots) are included, as well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries and cross-validation. Development snapshots with the latest bugfixes are available from www.bnlearn.com.


References in zbMATH (referenced in 48 articles )

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  1. Gherardo Varando, Federico Carli, Manuele Leonelli, Eva Riccomagno: The R Package stagedtrees for Structural Learning of Stratified Staged Trees (2020) arXiv
  2. Han Yu; Janhavi Moharil; Rachael Hageman Blair: BayesNetBP: An R Package for Probabilistic Reasoning in Bayesian Networks (2020) not zbMATH
  3. Kim, Gang-Hoo; Kim, Sung-Ho: Marginal information for structure learning (2020)
  4. Azzimonti, Laura; Corani, Giorgio; Zaffalon, Marco: Hierarchical estimation of parameters in Bayesian networks (2019)
  5. Czado, Claudia: Analyzing dependent data with vine copulas. A practical guide with R (2019)
  6. Gilles Kratzer, Fraser Iain Lewis, Arianna Comin, Marta Pittavino, Reinhard Furrer: Additive Bayesian Network Modelling with the R Package abn (2019) arXiv
  7. Gu, Jiaying; Fu, Fei; Zhou, Qing: Penalized estimation of directed acyclic graphs from discrete data (2019)
  8. Musella, Flaminia; Vicard, Paola; Vitale, Vincenzina: Copula grow-shrink algorithm for structural learning (2019)
  9. Sanguinetti, Guido (ed.); Huynh-Thu, Vân Anh (ed.): Gene regulatory networks. Methods and protocols (2019)
  10. Scutari, Marco; Graafland, Catharina Elisabeth; Gutiérrez, José Manuel: Who learns better Bayesian network structures: accuracy and speed of structure learning algorithms (2019)
  11. Scutari, Marco; Vitolo, Claudia; Tucker, Allan: Learning Bayesian networks from big data with greedy search: computational complexity and efficient implementation (2019)
  12. Talvitie, Topi; Eggeling, Ralf; Koivisto, Mikko: Learning Bayesian networks with local structure, mixed variables, and exact algorithms (2019)
  13. Zhao, Jianjun; Ho, Shen-Shyang: Improving Bayesian network local structure learning via data-driven symmetry correction methods (2019)
  14. Bojan Mihaljević, Concha Bielza, Pedro Larrañaga: bnclassify: Learning Bayesian Network Classifiers (2018) not zbMATH
  15. Geilke, Michael; Karwath, Andreas; Frank, Eibe; Kramer, Stefan: Online estimation of discrete, continuous, and conditional joint densities using classifier chains (2018)
  16. Hoegh, Andrew; Leman, Scotland: Correlated model fusion (2018)
  17. Kallah-Dagadu, G.; Nkansah, B. K.; Howard, N.: Probabilistic graphical modelling of causal effects among the occurrences of transcription factors in DNA sequence (2018)
  18. Liu, Xu-Qing; Liu, Xin-Sheng: Markov blanket and Markov boundary of multiple variables (2018)
  19. Mair, Patrick: Modern psychometrics with R (2018)
  20. Md. Bahadur Badsha, Evan A Martin, Audrey Qiuyan Fu: MRPC: An R package for accurate inference of causal graphs (2018) arXiv

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