PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.

References in zbMATH (referenced in 61 articles )

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  1. Jiang, Bo; Zhang, Xiao; Zuo, Yijun; Kang, Guolian: A powerful truncated tail strength method for testing multiple null hypotheses in one dataset (2011)
  2. Ashcroft, Michael: Does science influence the logic we ought to use: A reflection on the quantum logic controversy (2010)
  3. Aulchenko, Yurii S.; Struchalin, Maksim V.; Van Duijn, Cornelia M.: Probabel package for genome-wide association analysis of imputed data (2010) ioport
  4. Garson, James W.: Expressive power and incompleteness of propositional logics (2010)
  5. Lee, Seunggeun; Zou, Fei; Wright, Fred A.: Convergence and prediction of principal component scores in high-dimensional settings (2010)
  6. Mägi, Reedik; Morris, Andrew P.: GWAMA: software for genome-wide association meta-analysis (2010) ioport
  7. Astle, William; Balding, David J.: Population structure and cryptic relatedness in genetic association studies (2009)
  8. Ertola, Rodolfo: On univocal connectives (2009)
  9. Foulkes, Andrea S.: Applied statistical genetics with R. For population-based association studies (2009)
  10. Goh, Liang; Yap, Von Bing: Effects of normalization on quantitative traits in association test (2009) ioport
  11. Meng, Yan A.; Yu, Yi; Cupples, L. Adrienne; Farrer, Lindsay A.; Lunetta, Kathryn L.: Performance of random forest when SNPs are in linkage disequilibrium (2009) ioport
  12. Scherag, André; Hebebrand, Johannes; Schäfer, Helmut; Müller, Hans-Helge: Flexible designs for genomewide association studies (2009)
  13. Zhang, Heping; Wang, Minghui; Chen, Xiang: Willows: a memory efficient tree and forest construction package (2009) ioport
  14. Peregrin, Jaroslav: What is the logic of inference? (2008)
  15. Wansing, Heinrich: Connectives stranger than tonk (2006)
  16. Cook, Roy T.: What’s wrong with tonk(?) (2005)
  17. Humberstone, Lloyd: The pleasures of anticipation: Enriching intuitionistic logic (2001)
  18. Humberstone, Lloyd: The revival of rejective negation (2000)
  19. Read, Stephen: Harmony and autonomy in classical logic (2000)
  20. Humberstone, I. L.: Negation by iteration (1995)