yaml2sbml is a small package in Python to convert an ODE model specified in a YAML file into SBML for ODE simulation and into PEtab for parameter fitting. yaml2sbml offers: a translator of ODE models specified in YAML into SBML/PEtab via a Python and a command-line interface; a format validator for the input YAML; and a model editor, which provides a simplified interface to generate, import and export YAML models.
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References in zbMATH (referenced in 1 article , 1 standard article )
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- Jakob Vanhoefer, Marta R. A. Matos, Dilan Pathirana, Yannik Schälte, Jan Hasenauer: yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML (2021) not zbMATH