MatrixPlot: visualizing sequence constraints. MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot.

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  1. Gorodkin, J.: Comparing two (K)-category assignments by a (K)-category correlation coefficient (2004)