PSLpred
PSLpred: prediction of subcellular localization of bacterial proteins. We developed a web server PSLpred for predicting subcellular localization of gram-negative bacterial proteins with an overall accuracy of 91.2%. PSLpred is a hybrid approach-based method that integrates PSI-BLAST and three SVM modules based on compositions of residues, dipeptides and physico-chemical properties. The prediction accuracies of 90.7, 86.8, 90.3, 95.2 and 90.6% were attained for cytoplasmic, extracellular, inner-membrane, outer-membrane and periplasmic proteins, respectively. Furthermore, PSLpred was able to predict ∼74% of sequences with an average prediction accuracy of 98% at RI = 5. Availability: PSLpred is available at http://www.imtech.res.in/raghava/pslpred/
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References in zbMATH (referenced in 5 articles )
Showing results 1 to 5 of 5.
Sorted by year (- Arango-Argoty, G. A.; Jaramillo-Garzón, J. A.; Castellanos-Domínguez, G.: Feature extraction by statistical contact potentials and wavelet transform for predicting subcellular localizations in gram negative bacterial proteins (2015)
- Zakeri, Pooya; Moshiri, Behzad; Sadeghi, Mehdi: Prediction of protein submitochondria locations based on data fusion of various features of sequences (2011)
- Rahbar, Mohammad Reza; Rasooli, Iraj; Mousavi Gargari, Seyed Latif; Amani, Jafar; Fattahian, Yaser: In silico analysis of antibody triggering biofilm associated protein in \textitAcinetobacterbaumannii (2010)
- Kumar, Manish; Raghava, Gajendra P. S.: Prediction of nuclear proteins using SVM and HMM models (2009) ioport
- Tamura, Takeyuki; Akutsu, Tatsuya: Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition (2007) ioport