R package hapassoc: Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm. The following R functions are used for inference of trait associations with haplotypes and other covariates in generalized linear models. The functions are developed primarily for data collected in cohort or cross-sectional studies. They can accommodate uncertain haplotype phase and handle missing genotypes at some SNPs.
Keywords for this software
References in zbMATH (referenced in 3 articles , 1 standard article )
Showing results 1 to 3 of 3.
- Mathieu Emily, Nicolas Sounac, Florian Kroell, Magalie Houée-Bigot: Gene-Based Methods to Detect Gene-Gene Interaction in R: The GeneGeneInteR Package (2020) not zbMATH
- Jing Zhao: gap: Genetic Analysis Package (2007) not zbMATH
- Kelly Burkett; Jinko Graham; Brad McNeney: hapassoc: Software for Likelihood Inference of Trait Associations with SNP Haplotypes and Other Attributes (2006) not zbMATH