R package haplo.stats: Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous. Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.
Keywords for this software
References in zbMATH (referenced in 3 articles )
Showing results 1 to 3 of 3.
- Thompson, Katherine L.; Linnen, Catherine R.; Kubatko, Laura: Tree-based quantitative trait mapping in the presence of external covariates (2016)
- Jing Zhao: gap: Genetic Analysis Package (2007) not zbMATH
- Juan R. González, Lluís Armengol, Xavier Solé, Elisabet Guinó, Josep M. Mercader, Xavier Estivill, Víctor Moreno : SNPassoc: an R package to perform whole genome association studies (2007) not zbMATH