miRBase provides the following services: The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download. The miRBase Registry provides miRNA gene hunters with unique names for novel miRNA genes prior to publication of results. Visit the help pages for more information about the naming service.

References in zbMATH (referenced in 23 articles , 1 standard article )

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  1. Song, Wei; Liu, Huaping; Wang, Jiajia; Kong, Yan; Yin, Xia; Zang, Weidong: MATHT: a web server for comprehensive transcriptome data analysis (2018)
  2. Zhou, Shunxian; Xuan, Zhanwei; Wang, Lei; Ping, Pengyao; Pei, Tingrui: A novel model for predicting associations between diseases and lncRNA-miRNA pairs based on a newly constructed bipartite network (2018)
  3. Shen, Zhen; Zhang, You-Hua; Han, Kyungsook; Nandi, Asoke K.; Honig, Barry; Huang, De-Shuang: miRNA-disease association prediction with collaborative matrix factorization (2017)
  4. Vroland, Christophe; Salson, Mikaël; Bini, Sébastien; Touzet, Hélène: Approximate search of short patterns with high error rates using the (01^\ast0) lossless seeds (2016)
  5. Leha, Andreas: Statistical methods to enhance clinical prediction with high-dimensional data and ordinal response (2015)
  6. Kasabov, Nikola (ed.): Springer handbook of bio-/neuro-informatics (2014)
  7. Caniparoli, Luca; Marsili, Matteo; Vendruscolo, Michele: The codon information index: a quantitative measure of the information provided by the codon bias (2013)
  8. Akita, Tetsuya; Takuno, Shohei; Innan, Hideki: Modeling evolutionary growth of a microRNA-mediated regulation system (2012)
  9. Churkin, Alexander; Gabdank, Idan; Barash, Danny: On topological indices for small RNA graphs (2012)
  10. Rodríguez-Ezpeleta, Naiara (ed.); Hackenberg, Michael (ed.); Aransay, Ana M. (ed.): Bioinformatics for high throughput sequencing (2012)
  11. Hsieh, Wan J.; Wang, Hsiuying: Human microRNA target identification by RRSM (2011)
  12. Kozomara, Ana; Griffiths-Jones, Sam: Mirbase: integrating microrna annotation and deep-sequencing data (2011) ioport
  13. Bandyopadhyay, Sanghamitra; Bhattacharyya, Malay: Putmir: A database for extracting neighboring transcription factors of human micrornas (2010) ioport
  14. Guerra-Assunção, José Afonso; Enright, Anton J.: Mapmi: automated mapping of microrna loci (2010) ioport
  15. Jacobsen, Anders; Krogh, Anders; Kauppinen, Sakari; Lindow, Morten: Mirmaid: a unified programming interface for microrna data resources (2010) ioport
  16. Sahoo, Sudhakar; Albrecht, Andreas A.: Ranking of microRNA target prediction scores by Pareto front analysis (2010)
  17. Saito, Takaya; Sætrom, Pål: A two-step site and mrna-level model for predicting microrna targets (2010) ioport
  18. Wang, Minghao; Song, Xiaofeng; Han, Ping; Li, Wei; Jiang, Bin: New syntax to describe local continuous structure-sequence information for recognizing new pre-miRNAs (2010)
  19. 0002, Bing Liu; Li, Jiuyong; Tsykin, Anna; Liu, Lin; Gaur, Arti B.; Goodall, Gregory J.: Exploring complex mirna-mrna interactions with Bayesian networks by splitting-averaging strategy (2009) ioport
  20. Baev, Vesselin; Daskalova, Evelina; Minkov, Ivan: Computational identification of novel microRNA homologs in the chimpanzee genome (2009)

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