DIALIGN: multiple DNA and protein sequence alignment at BiBiServ. DIALIGN is a widely used software tool for multiple DNA and protein sequence alignment. The program combines local and global alignment features and can therefore be applied to sequence data that cannot be correctly aligned by more traditional approaches. DIALIGN is available online through Bielefeld Bioinformatics Server (BiBiServ). The downloadable version of the program offers several new program features. To compare the output of different alignment programs, we developed the program AltAVisT. Our software is available at http://bibiserv.TechFak.Uni-Bielefeld.DE/dialign/.

References in zbMATH (referenced in 33 articles , 1 standard article )

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  1. Liang, Chunguang; Schmid, Alexander; López-Sánchez, María José; Moya, Andres; Gross, Roy; Bernhardt, Jörg; Dandekar, Thomas: JANE: efficient mapping of prokaryotic ests and variable length sequence reads on related template genomes (2009) ioport
  2. Schreiber, Fabian; Pick, Kerstin; Erpenbeck, Dirk; Wörheide, Gert; Morgenstern, Burkhard: Orthoselect: a protocol for selecting orthologous groups in phylogenomics (2009) ioport
  3. Althaus, Ernst; Canzar, Stefan: A Lagrangian relaxation approach for the multiple sequence alignment problem (2008)
  4. Backofen, Rolf; Siebert, Sven: Fast detection of common sequence structure patterns in RNAs (2007)
  5. Choi, Jeong-Hyeon; Cho, Hwan-Gue; Kim, Sun: GAME: A simple and efficient whole genome alignment method using maximal exact match filtering (2005)
  6. Pöhler, Dirk; Werner, Nadine; Steinkamp, Rasmus; Morgenstern, Burkhard: Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC. (2005) ioport
  7. Zhang, Min; Fang, Weiwu; Zhang, Junhua; Chi, Zhongxian: MSAID: multiple sequence alignment based on a measure of information discrepancy (2005)
  8. Hernandez, David; Gras, Robin; Appel, Ron: MoDEL: an efficient strategy for ungapped local multiple alignment (2004)
  9. Morgenstern, Burkhard: DIALIGN: Multiple DNA and protein sequence alignment at bibiserv. (2004) ioport
  10. Schmollinger, Martin; Nieselt, Kay; Kaufmann, Michael; Morgenstern, Burkhard: DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors (2004) ioport
  11. Lam, T. W.; Lu, N.; Ting, H. F.; Wong, Prudence W. H.; Yiu, S. M.: Efficient algorithms for optimizing whole genome alignment with noise (2003)
  12. Morgenstern, B.: A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences (2002)
  13. Abdeddaïm, Saïd; Morgenstern, Burkhard: Speeding up the DIALIGN multiple alignment program by using the `greedy alignment of BIOlogical sequences LIBrary’ (GABIOS-LIB) (2001)