• Gudhi

  • Referenced in 43 articles [sw08777]
  • simplicial complexes and the computation of persistent homology in the Gudhi library. The Gudhi library ... generic C++ library for computational topology. Its goal is to provide robust, efficient, flexible ... analysis, where one is interested in learning topological invariants of a shape, sampled ... provides the same topological invariant represented by a persistence diagram. The persistent homology package provides...
  • Persistence Landscape

  • Referenced in 18 articles [sw21260]
  • persistence landscapes toolbox for topological statistics. Topological data analysis provides a multiscale description ... topology of quantitative data. The persistence landscape is a topological summary that can be easily ... learning. We give efficient algorithms for calculating persistence landscapes, their averages, and distances between such ... with topological data analysis. We present an experiment showing that the low-dimensional persistence landscapes...
  • PersistenceImages

  • Referenced in 40 articles [sw41418]
  • Persistence Images: A Stable Vector Representation of Persistent Homology. Many datasets can be viewed ... underlying space, and tools from topological data analysis can characterize this structure for the purpose ... knowledge discovery. One such tool is persistent homology, which provides a multiscale description ... dimensional vector representation which we call a persistence image (PI), and prove the stability...
  • TDA

  • Referenced in 24 articles [sw15508]
  • Tools for Topological Data Analysis. Tools for the statistical analysis of persistent homology...
  • Eirene

  • Referenced in 11 articles [sw26097]
  • emphasis on computing the persistent homology of a filtered topological cell complex. The algorithms here...
  • TopologyNet

  • Referenced in 8 articles [sw41013]
  • biological complexity. We introduce topology, i.e., element specific persistent homology (ESPH), to untangle geometric complexity ... complex geometry by one-dimensional (1D) topological invariants and retains crucial biological information...
  • SimBa

  • Referenced in 10 articles [sw28063]
  • approximating Rips-filtration persistence via Simplicial Batch collapse. In topological data analysis, a point cloud ... space is often analyzed by computing the persistence diagram or barcodes of a sequence...
  • SimPers

  • Referenced in 2 articles [sw23290]
  • paper below to compute the persistence of the sequence of simplicial maps, that ... Wang. Computing Topological Persistence for Simplicial Maps 30th Annu. Sympos. Comput. Geom. SoCG...
  • SimpPers

  • Referenced in 1 article [sw28221]
  • SimPers: Software for Topological Persistence under Simplicial Maps. SimPers software can be used ... paper below to compute the persistence of the sequence of simplicial maps, that ... Wang. Computing Topological Persistence for Simplicial Maps 30th Annu. Sympos. Comput. Geom. SoCG 2014. There...
  • TDAstats

  • Referenced in 3 articles [sw31276]
  • useR conducting topological data analysis, specifically via the calculation of persistent homology in a Vietoris ... general background on computing persistent homology for topological data analysis, see Otter ... used for nonparametric statistical inference in topological data analysis, read Robinson & Turner ... learn more about how TDAstats calculates persistent homology, you can visit the GitHub repository...
  • CliqueTop

  • Referenced in 29 articles [sw29766]
  • documentation for the compute_clique_topology function. CliqueTop currently relies on the following software packages ... should function automatically without installation: For persistent homology computations, we make use of Perseus ... Giusti, Pastalkova, Curto and Itskov, ”Clique topology reveals instrinsic geometric structure in neural correlations.” (arXiv...
  • jHoles

  • Referenced in 7 articles [sw15020]
  • clique weight rank persistent homology. Complex networks equipped with topological data analysis ... version of Holes, an algorithms based on persistent homology for studying the connectivity features...
  • DisPerSE

  • Referenced in 1 article [sw26498]
  • source software for the identification of persistent topological features such as peaks, voids, walls ... concept of persistence (a measure of the robustness of topological features...
  • HERMES

  • Referenced in 2 articles [sw41012]
  • software. Persistent homology (PH) is one of the most popular tools in topological data analysis ... data science. Our earlier work introduced the persistent spectral graph (PSG) theory as a unified ... theory, families of persistent Laplacian matrices (PLMs) corresponding to various topological dimensions are constructed ... PLMs offer the same topological invariants, namely persistent Betti numbers, at various dimensions as those...
  • Ripserer.jl

  • Referenced in 2 articles [sw35622]
  • Ripser algorithm. Roughly speaking, persistent homology detects the global topological and local geometric structure ... stable way. If you are unfamiliar with persistent homology, I recommend reading this excellent introduction...
  • RIVET

  • Referenced in 6 articles [sw27770]
  • topological data analysis, and more specifically, for the visualization and analysis of two-parameter persistent...
  • lookout

  • Referenced in 1 article [sw42798]
  • estimates is computed using persistent homology, a technique in topological data analysis. Using peak-over...
  • kernelTDA

  • Referenced in 1 article [sw41104]
  • framework of Topological Data Analysis (TDA), more specifically: Persistence Scale Space Kernel; Sliced Wasserstein Kernel...
  • PersistenceCurves

  • Referenced in 2 articles [sw41417]
  • diagrams. Persistence diagrams are one of the main tools in the field of Topological Data ... machine learning algorithms on the space of persistence diagrams proves to be challenging...
  • CTL

  • Referenced in 2 articles [sw31304]
  • generic C++ library for applied and computational topology. This C++11 library provides ... Building Neighborhood Graphs; Building Cellular Complexes; Computing [persistent] homology over finite fields; Parallel algorithm...