• TestU01

  • Referenced in 120 articles [sw08033]
  • user-defined generators. Specific tests suites for either sequences of uniform random numbers ... sequences are also available. Basic tools for plotting vectors of points produced by generators ... studies of the interaction between a specific test and the structure of the point sets...
  • MUSCLE

  • Referenced in 74 articles [sw13193]
  • program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance ... Coffee, MAFFT and CLUSTALW on four test sets of reference alignments: BAliBASE, SABmark, SMART ... fastest of the tested methods for large numbers of sequences, aligning 5000 sequences of average ... MUSCLE program, source code and PREFAB test data are freely available at http://www.drive5. com/muscle...
  • DEseq

  • Referenced in 59 articles [sw10344]
  • count data from high-throughput sequencing assays and test for differential expression based...
  • T-coffee

  • Referenced in 41 articles [sw13195]
  • also on how all of the sequences align with each other. This alignment information ... comparison with a set of 141 test cases, than any of the popular alternatives that ... phylogenetic spread of the sequences in the tests...
  • UniTESK

  • Referenced in 21 articles [sw06566]
  • mathematical algorithms enable automated generation of test sequences from specifications, that ensure reliable testing...
  • Algorithm 823

  • Referenced in 36 articles [sw04470]
  • Furthermore, the performances of these sequences on various test problems are discussed...
  • Symstra

  • Referenced in 19 articles [sw01296]
  • symbolic execution Object-oriented unit tests consist of sequences of method invocations. Behavior ... invocation. Correspondingly, generating unit tests involves two tasks: generating method sequences that build relevant receiver ... that achieves both test generation tasks using symbolic execution of method sequences with symbolic arguments ... class under test and a bound on the length of sequences, Symstra systematically explores...
  • IndependenceTests

  • Referenced in 29 articles [sw18402]
  • independence between random vectors. Functions for testing mutual independence between many numerical random vectors ... independence of a multivariate stationary sequence. The proposed test works when some...
  • GQTPAR

  • Referenced in 325 articles [sw07451]
  • prove that under reasonable assumptions the sequence generated by Newton’s method has a limit ... trust region method. In our tests a call to GQTPAR only required 1.6 iterations...
  • DESeq2

  • Referenced in 27 articles [sw41938]
  • count data from high-throughput sequencing assays and test for differential expression based...
  • ape

  • Referenced in 59 articles [sw04569]
  • writing nucleotide sequences, and several tools such as Mantel’s test, minimum spanning tree, generalized...
  • Ent

  • Referenced in 9 articles [sw08993]
  • Pseudorandom Number Sequence Test Program. This page describes a program, ent, which applies various tests ... sequences of bytes stored in files and reports the results of those tests. The program...
  • CLPS-B

  • Referenced in 7 articles [sw00132]
  • used to animate and generate test sequences from B formal specifications. The solver, called CLPS...
  • SCPRED

  • Referenced in 6 articles [sw26876]
  • feature computed from the sequence. Tests performed with datasets of 1673 protein chains, in which...
  • ICON

  • Referenced in 9 articles [sw31159]
  • diffusion on the other hand. A sequence of tests with varying complexity indicates that...
  • SVMlight

  • Referenced in 264 articles [sw04076]
  • Almost unbiased estimates provides leave-one-out testing. SVMlight exploits that the results of most ... SVMs. The algorithm proceeds by solving a sequence of optimization problems lower-bounding the solution...
  • VESTA

  • Referenced in 25 articles [sw08425]
  • checking VESTA uses a sequence of inter-related statistical hypothesis testing to check...
  • randtoolbox

  • Referenced in 17 articles [sw07969]
  • quasi random number generation and RNG tests. The package provides (1) pseudo random generators - general ... random generators - the Torus algorithm, the Sobol sequence, the Halton sequence (thus ... include Van der Corput sequence) and (3) some additional tests such as the gap test...
  • Cell-PLoc

  • Referenced in 90 articles [sw09126]
  • demonstrated by a series of cross-validation tests on the benchmark data sets that covered ... included had greater than or equal to25% sequence identity to any other protein...