• Matlab

• Referenced in 13544 articles [sw00558]
• MATLAB® is a high-level language and interactive...

• R

• Referenced in 9969 articles [sw00771]
• R is a language and environment for statistical...

• SUNDIALS

• Referenced in 241 articles [sw00927]
• SUNDIALS was implemented with the goal of providing...

• AUTO

• Referenced in 943 articles [sw01059]
• AUTO is a software for continuation and bifurcation...

• S-PLUS

• Referenced in 615 articles [sw02892]
• S-PLUS is a powerful environment for statistical...

• NEURON

• Referenced in 187 articles [sw03059]
• Parallel network simulations with NEURON. The NEURON simulation...

• AUTO-86

• Referenced in 277 articles [sw04220]
• AUTO is a software for continuation and bifurcation...

• Rfam

• Referenced in 33 articles [sw04637]
• The Rfam database is a collection of RNA...

• Rnamotif

• Referenced in 10 articles [sw04638]
• The rnamotif program [1] searches a database for...

• LIBSVM

• Referenced in 1185 articles [sw04879]
• LIBSVM is a library for Support Vector Machines...

• LBFGS-B

• Referenced in 414 articles [sw05142]
• Algorithm 778: L-BFGS-B Fortran subroutines for...

• XPPAUT

• Referenced in 453 articles [sw05543]
• XPPAUT is software for the analysis and simulation...

• WEKA

• Referenced in 305 articles [sw06435]
• WEKA: Waikato Environment for Knowledge Analysis. WEKA is...

• ode23

• Referenced in 318 articles [sw06600]
• The MATLAB ODE Suite: ode23: Solve nonstiff differential...

• ode45

• Referenced in 315 articles [sw06762]
• Matlab ode45. Solve nonstiff differential equations; medium order...

• Biopython

• Referenced in 20 articles [sw07357]
• Biopython: freely available Python tools for computational molecular...

• Ode15s

• Referenced in 330 articles [sw07426]
• ode15s. Solve stiff differential equations and DAEs; variable...

• minet

• Referenced in 8 articles [sw08432]
• minet: A R/Bioconductor Package for Inferring Large Transcriptional...

• Spikenet

• Referenced in 12 articles [sw08892]
• SpikeNET: an event-driven simulation package for modelling...

• Neurofitter

• Referenced in 14 articles [sw09289]
• Automated neuron model optimization techniques: The increase in...