
STRUCTURE
 Referenced in 75 articles
[sw13672]
 multilocus genotype data to investigate population structure. Its uses include inferring the presence...

PSPManalysis
 Referenced in 18 articles
[sw20475]
 bifurcation and evolutionary analysis of physiologically structured population models (PSPMs), which is a class...

PyClone
 Referenced in 11 articles
[sw26928]
 PyClone: statistical inference of clonal population structure in cancer. We introduce PyClone, a statistical model ... inference of clonal population structures in cancers. PyClone is a Bayesian clustering method for grouping...

MSMS
 Referenced in 7 articles
[sw34261]
 coalescent simulation program for a structured population with selection at a single diploid locus ... simulator ms to model population structure and demography, but adds a model for deme ... hard and soft selective sweeps in structured populations or the genetic footprint of local adaptation...

BAPS 2
 Referenced in 7 articles
[sw35649]
 possibilities for the analysis of genetic population structure. Bayesian statistical methods based on simulation techniques ... tools for the analysis of genetic population structure. We have previously developed a Markov chain...

fastSTRUCTURE
 Referenced in 5 articles
[sw25207]
 fastSTRUCTURE: variational inference of population structure in large SNP data sets. Tools for estimating population ... applications in population genetics. However, inferring population structure in large modern data sets imposes severe ... hierarchical prior to detect weak population structure in the data. We test the variational algorithms ... number of populations represented in the data, with minimal bias toward detecting structure when...

BIANCA
 Referenced in 13 articles
[sw02081]
 optimisation of composite laminates is a multipopulation genetic algorithm capable to deal with unconstrained ... representation of the information, i.e., the structure of populations and individuals in BIANCA ... general problems of optimisation of materials and structures. In this paper, we describe specifically...

Sfold
 Referenced in 13 articles
[sw23820]
 paradigm for the prediction of RNA secondary structure. One of the main objectives of this ... likely existence of a population of structures for the target mRNA. In addition...

admixture
 Referenced in 6 articles
[sw26449]
 software is widely used to estimate population structure from genotype data in part because ... likelihood estimates of the admixture proportions and population allele frequencies using the expectation maximization...

GEMMA
 Referenced in 5 articles
[sw23999]
 single phenotype to account for population stratification and sample structure, and for estimating the proportion ... with multiple phenotypes simultaneously while controlling for population stratification, and for estimating genetic correlations among ... modeling all markers while controlling for population structure. It estimates variance component/chip heritability, and partitions...

PSMIX
 Referenced in 5 articles
[sw13670]
 PSMIX: an R package for population structure inference via maximum likelihood method. Background: Inference ... population stratification and individual admixture. Conclusion: Compared with software based on Bayesian methods (e.g., STRUCTURE...

Matrix eQTL
 Referenced in 5 articles
[sw20450]
 used to study the regulatory structure of normal tissues and to search for genetic factors ... account for such factors as population structure, gender, and clinical variables. It also supports testing...

SORTIE
 Referenced in 4 articles
[sw16636]
 Competition for light in forest population dynamics: from computer simulator to mathematical model. In this ... construct a size structured population dynamics model with one and two species and with spatial...

FRED
 Referenced in 7 articles
[sw23562]
 depends on the mixing patterns within the population, and these mixing patterns depend in part ... spatial distribution and age structure of the population, the distribution of size and composition ... adults, and the size and age structure of schools. Finally, public health planners must take ... account the health behavior patterns of the population, patterns that often vary according to socioeconomic...

TASSEL
 Referenced in 5 articles
[sw11446]
 confounding effects of both population and family structure. TASSEL (Trait Analysis by aSSociation, Evolution ... linear model approaches for controlling population and family structure. For result interpretation, the program allows...

CLUMPP
 Referenced in 3 articles
[sw08998]
 switching and multimodality in analysis of population structure. Clustering of individuals into populations ... settings. In populationgenetic clustering algorithms, such as BAPS, STRUCTURE and TESS, individual multilocus genotypes...

TESD
 Referenced in 2 articles
[sw35415]
 populations. In addition, the influence of population structuring has only recently been investigated. Transposable Element ... insertions; and (ii) population parameters, such as population size and migration rates. The simulations ... dynamic fate of TEs in structured populations, can be extended by using more specific molecular...

NERF
 Referenced in 3 articles
[sw01106]
 aggregated fatigue behaviour of a population of structures or components which possibly contain a crack ... description of the applied load sequence and population variations about the mean, NERF computes, among ... best strategy for a particular population of structures. This document details the reliability models that...

Qxpak
 Referenced in 3 articles
[sw35126]
 more importantly  to correct for population structure in association studies. In crosses, two parental lines...

PhyloWGS
 Referenced in 7 articles
[sw26926]
 VAFs) of point mutations and population frequencies of structural variations. We introduce a principled phylogenic...