• I-TASSER

  • Referenced in 18 articles [sw17207]
  • protein is then inferred by structurally matching the 3D models with other known proteins ... contains full-length secondary and tertiary structure predictions, and functional annotations on ligand-binding sites...
  • MediaBench

  • Referenced in 34 articles [sw08949]
  • which have VLIW and SIMD structures that are well matched to the needs...
  • stringr

  • Referenced in 16 articles [sw11296]
  • appropriately, and the output data structures from each function matches the input data structures...
  • Rnamotif

  • Referenced in 10 articles [sw04638]
  • match a ”motif” describing secondary structure interactions. A match means that the given sequence ... given secondary structure, but is not intended to be predictive. Matches can be ranked...
  • BPKit

  • Referenced in 22 articles [sw05807]
  • preconditionings are possible, matched to the difficulty and structure of the problem...
  • TALE

  • Referenced in 8 articles [sw13844]
  • matching of large graph queries. We propose a novel indexing method that incorporates graph structural ... information in a hybrid index structure. This indexing technique achieves high pruning power ... size. In addition, we propose an innovative matching paradigm to query large graphs. This technique ... their importance in the graph structure. The matching algorithm first matches the important nodes...
  • REMAP3D

  • Referenced in 12 articles [sw18135]
  • other functions required to match the data structure assumptions of the remapping module to those...
  • SimRank

  • Referenced in 44 articles [sw25278]
  • SimRank: a measure of structural-context similarity. The problem of measuring ”similarity” of objects arises ... domain-specific measures have been developed, e.g., matching text across documents or computing overlap among ... object relationships, that measures similarity of the structural context in which objects occur, based...
  • EMNIST

  • Referenced in 10 articles [sw31839]
  • pixel image format and dataset structure that directly matches the MNIST dataset . Further information...
  • GrGen

  • Referenced in 21 articles [sw00387]
  • high-level way of processing pointer structures. GrGen.NET allows you to work at the abstraction ... level of graphs, with declarative pattern matching and rewriting, on a visualization of your mesh/network ... objects, instead of low level pointer structure fiddling, chasing objects by following references...
  • Simscape

  • Referenced in 4 articles [sw10165]
  • components use physical connections, your models match the structure of the system you are developing...
  • OMG

  • Referenced in 3 articles [sw32082]
  • composition produces all non-isomorphic chemical structures that match that elemental composition. Furthermore, this structure...
  • RNAshapes

  • Referenced in 7 articles [sw07960]
  • folding with correct dangling energies, structure graph output, shape matching and a sliding window approach...
  • KronFit

  • Referenced in 48 articles [sw20428]
  • network models and generators either fail to match several of the above properties, are complicated ... networks that have all the above mentioned structural properties. Our main idea here...
  • shapeDTW

  • Referenced in 2 articles [sw15328]
  • points with entirely dissimilar local structures may be matched by DTW. To address this problem ... enhances DTW by taking point-wise local structural information into consideration. shapeDTW is inherently ... attempts to pair locally similar structures and to avoid matching points with distinct neighborhood structures...
  • NeMa

  • Referenced in 4 articles [sw18899]
  • differ from its matches in the target graph in both structure and node labels, thus ... this paper, we propose NeMa (Network Match), a neighborhood-based subgraph matching technique for querying ... aggregates the costs of matching individual nodes, and unifies both structure and node label similarities ... metric, we formulate the minimum cost subgraph matching problem. Given a query graph...
  • Athena

  • Referenced in 10 articles [sw09967]
  • logic (completeness, compactness, structural induction over terms and formulas, efficient matching and unification algorithms...
  • UnQL

  • Referenced in 10 articles [sw20018]
  • based on structural recursion. This paper presents structural recursion as the basis of the syntax ... pattern matching and show that it can be expressed using structural recursion, which is introduced...
  • ViST

  • Referenced in 13 articles [sw18896]
  • structure-encoded sequences, we show that querying XML data is equivalent to finding subsequence matches ... provide the final answers, ViST uses tree structures as the basic unit of query...
  • MAMMOTH

  • Referenced in 11 articles [sw26215]
  • matching molecular models obtained from theory): an automated method for model comparison. Advances in structural...