• SimVascular

• Referenced in 18 articles [sw25043]
• SimVascular: An Open Source Pipeline for Cardiovascular Simulation. Patient-specific cardiovascular simulation has become ... fully open-source SimVascular software package, which provides a complete pipeline from medical image data ... planning and medical device design. The SimVascular software has recently been refactored and expanded ... components to create a fully open source pipeline. These developments foster advances in cardiovascular modeling...

• bioperl

• Referenced in 23 articles [sw10579]
• bioinformatics applications (Run package), software to automate bioinformatic analyses (bioperl-pipeline) are all available...

• Orca

• Referenced in 7 articles [sw09792]
• organized conceptually into segments of a pipeline. The software design takes advantage of the object ... Java language to open up the data pipeline, allowing developers to have greater control over...

• VoxelPipe

• Referenced in 3 articles [sw14878]
• present a highly flexible and efficient software pipeline for programmable triangle voxelization. The pipeline, entirely...

• Sehwa

• Referenced in 9 articles [sw08111]
• Sehwa: a software package for synthesis of pipelines from behavioral specification. A set of techniques...

• MethylCoder

• Referenced in 2 articles [sw35177]
• MethylCoder: software pipeline for bisulfite-treated sequences. Motivation: MethylCoder is a software program that generates...

• Crossbow

• Referenced in 2 articles [sw34367]
• Crossbow is a scalable software pipeline for whole genome resequencing analysis. It combines Bowtie...

• HAL_

• Referenced in 2 articles [sw07224]
• grained level and the use of software pipelining. In this paper, we describe the design...

• miRNAkey

• Referenced in 1 article [sw29585]
• miRNAkey - A software pipeline for the analysis of microRNA Deep Sequencing data. Deep Sequencing technologies ... mode of miRNA regulation. miRNAkey is a software package designed to be used...

• AI Explainability 360

• Referenced in 5 articles [sw35201]
• modeling pipeline. The toolkit is not only the software, but also guidance material, tutorials...

• ProteoAnnotator

• Referenced in 1 article [sw31810]
• ProteoAnnotator is a completely automated software pipeline for integration of mass spectrometry (MS) based proteomic...

• GraphSpace

• Referenced in 1 article [sw42198]
• this library into a user’s software pipeline. Note: GraphSpace is moving into GeomStats python...

• emba

• Referenced in 1 article [sw35159]
• simulation data results of the DrugLogics software pipeline which predicts synergistic drug combinations in cancer...

• StreamTMC

• Referenced in 1 article [sw07456]
• three optimization phases. First, a software pipelining schedule is constructed to exploit the parallelism. Second...

• SIMONE

• Referenced in 10 articles [sw17978]
• distribution. SIMONE software system is designed to be a valuable tool for: Pipeline system designers...

• Anaconda

• Referenced in 12 articles [sw24789]
• software platform that enables organizations to develop, govern, and automate data science and AI pipelines...

• G+Smo

• Referenced in 48 articles [sw14372]
• unified framework in the design and analysis pipeline. G+Smo is an object-oriented, cross ... providing access to high quality, open-source software to the forming isogeometric numerical simulation community...

• JavaBERT

• Referenced in 1 article [sw41373]
• code. We introduce a data retrieval pipeline for software code and train a model upon...

• Blender

• Referenced in 20 articles [sw08125]
• small studios who benefit from its unified pipeline and responsive development process. Examples from many ... collaborative tool: Blender is your own 3D software...

• MethPipe

• Referenced in 1 article [sw30174]
• sequencing data. The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data ... RRBS). The MethPipe software package is a computational pipeline for analyzing bisulfite sequencing data (WGBS...