• SimPrily

  • Referenced in 1 article [sw32668]
  • parameters to run simulations, incorporate single nucleotide polymorphism array ascertainment bias into the simulated model...
  • VanillaICE

  • Referenced in 6 articles [sw11310]
  • throughput SNP arrays. Background (http://www.biostat.jhsph.edu/ iruczins/software/vanillaice.html): High density single nucleotide polymorphism microarrays (SNP chips ... fitting hidden Markov models on genomic array data to infer chromosomal alterations, including deletions, amplifications...
  • dChipSNP

  • Referenced in 6 articles [sw18745]
  • microarrays allow genotyping of thousands of single-nucleotide polymorphisms (SNPs) in parallel. Recently, this technology ... report automated methods for pooling SNP array replicates to make LOH calls, visualizing...
  • PLASQ

  • Referenced in 6 articles [sw18746]
  • allelic dosage in cancer cells from SNP array data. Human cancer is largely driven ... class of such mutations is copy number polymorphisms, comprised of deviations from the normal diploid ... parental chromosomes in cancer cells from single-nucleotide polymorphism (SNP) microarray data. Our approach ... novel classification of probes on the array. As a result of this classification...
  • SNPchip

  • Referenced in 1 article [sw11311]
  • methods for SNP array data. Summary: High-density single nucleotide polymorphism microarrays (SNP chips) provide...
  • GenoSNP

  • Referenced in 4 articles [sw34351]
  • allele-specific intensity data on a single nucleotide polymorphism (SNP) by SNP basis. This approach ... that have been sampled on the same array and platform. We have developed...
  • oligo

  • Referenced in 9 articles [sw06102]
  • currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files). In most microarray technologies ... methodology useful for preprocessing Affymetrix single-nucleotide polymorphism chips and obtaining genotype calls with...
  • DistStat.jl

  • Referenced in 1 article [sw36529]
  • DistStat.jl implements a data structure for distributed arrays that work on both multi-node ... subjects and 500,000 single nucleotide polymorphisms using the ℓ1-regularized Cox proportional hazards model...
  • Mathematica

  • Referenced in 5957 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 12309 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • REDUCE

  • Referenced in 740 articles [sw00789]
  • REDUCE is an interactive system for general algebraic...
  • QUADPACK

  • Referenced in 250 articles [sw01236]
  • Fortran subprograms for evaluating definite integrals of functions...
  • S-PLUS

  • Referenced in 601 articles [sw02892]
  • S-PLUS is a powerful environment for statistical...
  • SeDuMi

  • Referenced in 1191 articles [sw04002]
  • SeDuMi is a Matlab toolbox for solving optimization...
  • Bioconductor

  • Referenced in 305 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • CRAN

  • Referenced in 473 articles [sw04351]
  • R is ‘GNU S’, a freely available language...
  • LIBSVM

  • Referenced in 1101 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • gcrma

  • Referenced in 96 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • MPI

  • Referenced in 500 articles [sw06496]
  • Automatic differentiation through the use of hyper-dual...