• DAFS

• Referenced in 1 article [sw17125]
• DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition. Motivation: It is well ... from aligned sequences is a better choice if homologous sequences with reliable alignments are available ... alignments of RNA sequences. To tackle this dilemma, we require a fast and accurate aligner ... DAFS, a novel algorithm that simultaneously aligns and folds RNA sequences based on maximizing expected...

• Cofolga

• Referenced in 2 articles [sw12674]
• program developed performs folding and alignment of two homologous RNAs simultaneously. Cofolga was tested with ... those obtained by a single-sequence folding based on free-energy minimization in which corresponding...

• ANSYS

• Referenced in 704 articles [sw00044]
• ANSYS offers a comprehensive software suite that spans...

• Mathematica

• Referenced in 6355 articles [sw00554]
• Almost any workflow involves computing results, and that...

• Matlab

• Referenced in 13544 articles [sw00558]
• MATLAB® is a high-level language and interactive...

• R

• Referenced in 9969 articles [sw00771]
• R is a language and environment for statistical...

• SCIP

• Referenced in 542 articles [sw01091]
• SCIP is currently one of the fastest non...

• UCI-ml

• Referenced in 3403 articles [sw04074]
• UC Irvine Machine Learning Repository. We currently maintain...

• CPLEX

• Referenced in 2773 articles [sw04082]
• IBM® ILOG® CPLEX® offers C, C++, Java, .NET...

• ARPACK

• Referenced in 842 articles [sw04218]
• ARPACK is a collection of Fortran77 subroutines designed...

• fda (R)

• Referenced in 1531 articles [sw04511]
• fda: Functional Data Analysis , These functions were developed...

• CVX

• Referenced in 845 articles [sw04594]
• CVX is a modeling system for constructing and...

• Rfam

• Referenced in 33 articles [sw04637]
• The Rfam database is a collection of RNA...

• SAS

• Referenced in 1555 articles [sw06377]
• SAS (Statistical Analysis System) is an integrated system...

• Matplotlib

• Referenced in 393 articles [sw06590]
• matplotlib is a python 2D plotting library which...

• robustbase

• Referenced in 491 articles [sw07114]
• R package robustbase: Basic Robust Statistics. ”Essential” Robust...

• OEIS

• Referenced in 4221 articles [sw07248]
• The On-Line Encyclopedia of Integer Sequence. The...

• Tabu search

• Referenced in 1066 articles [sw08556]
• A user’s guide to tabu search. We...

• Cell-PLoc

• Referenced in 90 articles [sw09126]
• Cell-PLoc: a package of Web servers for...

• BayesDA

• Referenced in 1310 articles [sw11008]
• BayesDA: Functions and Datasets for the book ”Bayesian...