• SaTScan

  • Referenced in 27 articles [sw14250]
  • spatial, temporal, or space-time scan statistics. It is designed for any of the following...
  • scanstatistics

  • Referenced in 3 articles [sw22348]
  • scanstatistics: Space-Time Anomaly Detection using Scan Statistics. Detection of anomalous space-time clusters using ... scan statistics methodology. Focuses on prospective surveillance of data streams, scanning for clusters with ongoing...
  • ChromoScan

  • Referenced in 3 articles [sw35412]
  • ChromoScan: a scan statistic application for identifying chromosomal regions in genomic studies. ChromoScan ... implementation of a genome-based scan statistic that detects genomic regions, which are statistically significant...
  • PhyloScan

  • Referenced in 2 articles [sw34212]
  • along evolutionary lineages, we design a scan statistic over the phylogenetic tree to allow nodes ... bound the tail probability of the scan statistic, and verify its accuracy through simulations...
  • rsatscan

  • Referenced in 2 articles [sw28045]
  • that have excess risk, based on scan statistics, and uses Monte Carlo hypothesis testing...
  • SNscan

  • Referenced in 1 article [sw30061]
  • package SNscan: Scan Statistics in Social Networks. Scan statistics applied in social network data...
  • DMRScan

  • Referenced in 1 article [sw31094]
  • qualitative and quantitative traits), using a scan statistic with underlying Poisson heuristics. The scan statistic...
  • SpatialEpiApp

  • Referenced in 1 article [sw19114]
  • detect clusters by using the scan statistics implemented in ’SaTScan’, . The application allows...
  • AFNI

  • Referenced in 22 articles [sw09076]
  • landmarks allows transformation of anatomical and functional scans into stereotaxic (Talairach–Tournoux) coordinates. The techniques ... Facilities are provided for several types of statistical analyses of multiple 3D functional data sets...
  • DigiFract

  • Referenced in 1 article [sw27761]
  • through follow-up data processing. Orientation statistics, scan-line or scan-window analyses...
  • GW-SEM

  • Referenced in 1 article [sw37731]
  • psychiatric and behavioral genetics, where the statistical methods are often handicapped by phenotypes with ... data that genome-wide scans produce, the statistical methods used to analyze the data...
  • TOPAL

  • Referenced in 2 articles [sw23049]
  • sequences within multiple alignments. MOTIVATION: The Dss statistic was proposed by McGuire ... Biol. Evol., 14, 1125-1131, 1997) for scanning data sets for the presence of recombination ... important step in some phylogenetic analyses. The statistic, however, could not distinguish well between among...
  • LEA

  • Referenced in 1 article [sw25208]
  • population structure and genome scans for local adaptation. It includes statistical methods for estimating ancestry...
  • HEGESMA

  • Referenced in 2 articles [sw10468]
  • scans. The program provides as an output the average of ranks and three heterogeneity statistics...
  • R/qtl

  • Referenced in 13 articles [sw20451]
  • mapping software into a general statistical analysis program. Our goal is to make complex ... genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans...
  • DrugscorePPI

  • Referenced in 1 article [sw30037]
  • computational alanine-scanning in protein-protein interfaces. The PDB-derived statistical potentials have been fine...
  • POBE

  • Referenced in 1 article [sw24493]
  • scanning time for user specified experimental factors and model parameters so that the statistical efficiency...
  • FLOPS

  • Referenced in 2 articles [sw34945]
  • either as a script or function. By scanning and parsing each line of the MATLAB ... operations, matrix decompositions, elementary functions and common statistics functions are counted. The program supports user...
  • PheWAS

  • Referenced in 2 articles [sw35198]
  • demonstrating the feasibility of a phenome-wide scan to discover gene–disease associations. Results: Four ... PheWAS algorithm also identified 19 previously unknown statistical associations between these SNPs and diseases...
  • smerc

  • Referenced in 1 article [sw30059]
  • smerc: Statistical Methods for Regional Counts. Implements statistical methods for analyzing the counts of areal ... package has a heavy emphasis on spatial scan methods, first introduced by Kulldorff and Nagarwalla...