• Nebcutter

  • Referenced in 4 articles [sw08930]
  • program to cleave DNA with restriction enzymes. NEBcutter, version 1.0, is a program available ... produce a comprehensive report of the restriction enzymes that will cleave the sequence. It produces ... variety of outputs including restriction enzyme maps, theoretical digests and links into the restriction enzyme...
  • JCat

  • Referenced in 7 articles [sw17356]
  • avoidance of unwanted cleavage sites for restriction enzymes and Rho-independent transcription terminators. The output ... further optimized to avoid commonly used restriction sites. In a second example, the Pseudomonas aeruginosa...
  • GCG

  • Referenced in 3 articles [sw33015]
  • nucleotide coding sequence or determining restriction enzyme cutting sites. Most GCG programs use one file...
  • Codon

  • Referenced in 3 articles [sw15173]
  • Motif engineering, such as removal of restriction enzyme recognition sites or addition of immuno-stimulatory...
  • RESCOT

  • Referenced in 1 article [sw40497]
  • RESCOT: restriction enzyme set and combination optimization tools for rNMP capture techniques. The incorporation ... first step of ribose-seq is restriction enzyme (RE) fragmentation, which cuts the genome into ... Here, we designed a computational method, Restriction Enzyme Set and Combination Optimization Tools (RESCOT...
  • tacg

  • Referenced in 2 articles [sw14127]
  • used in database searching, restriction enzyme mapping, and finding open reading frames. It is done...
  • RRBSMAP

  • Referenced in 2 articles [sw23509]
  • genomic scale. RRBS involves restriction-enzyme digestion, bisulfite conversion and size selection, resulting...
  • OrthoMCL

  • Referenced in 15 articles [sw29602]
  • comparative genomics, and the identification of taxonomically restricted sequences. Methods successfully exploited for prokaryotic genome ... clusters incorporating P. falciparum genes identifies numerous enzymes that were incompletely annotated in first-pass...
  • MetNetAligner

  • Referenced in 2 articles [sw25791]
  • novel scoring scheme which measures enzyme-to-enzyme functional similarity and a fast algorithm which ... optimal mappings from a directed graph with restricted cyclic structure to an arbitrary directed graph...
  • GASS

  • Referenced in 0 articles [sw25076]
  • GASS: identifying enzyme active sites with genetic algorithms. Motivation: Currently, 25% of proteins annotated ... different chains and does not impose any restrictions on the active site size. Results: GASS...
  • Maple

  • Referenced in 5403 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6445 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13702 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • NAG

  • Referenced in 425 articles [sw00610]
  • Produced by experts for use in a variety...
  • R

  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...
  • SINGULAR

  • Referenced in 1522 articles [sw00866]
  • SINGULAR is a Computer Algebra system (CAS) for...
  • AUTO

  • Referenced in 958 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...
  • MACSYMA

  • Referenced in 721 articles [sw01209]
  • Macsyma is a general purpose symbolic-numerical-graphical...
  • RODAS

  • Referenced in 1757 articles [sw04112]
  • Rosenbrock method of order 4(3), for problems...
  • PITCON

  • Referenced in 260 articles [sw04244]
  • Algorithm 596: Methods for solving systems of nonlinear...