• PAUP*

  • Referenced in 53 articles [sw07834]
  • molecular, morphological and/or behavioral data to infer phylogenetic relationships has expanded well beyond its central ... most widely used software package for the inference of evolutionary trees. In addition, the PAUP...
  • MEGA

  • Referenced in 34 articles [sw09078]
  • species with a special emphasis on inferring evolutionary relationships and patterns of DNA and protein...
  • OpenBUGS

  • Referenced in 74 articles [sw08316]
  • software package for performing Bayesian inference Using Gibbs Sampling. The user specifies a statistical model ... almost) arbitrary complexity, by simply stating the relationships between related variables. The software includes...
  • Knorm

  • Referenced in 5 articles [sw16562]
  • statistical framework to infer functional gene relationships from biologically interrelated microarray experiments. A major task ... pathways. In current studies of gene relationships, the presence of expression dependencies attributable ... dependencies can result in inaccurate inferences of functional gene relationships, and hence incorrect biological conclusions ... model and an estimation procedure to infer gene relationships when there are two-way dependencies...
  • GeneNetwork

  • Referenced in 2 articles [sw35671]
  • three data interpolation approaches to infer relationships between genes. GeneNetwork enables a user to readily...
  • ASIAN

  • Referenced in 3 articles [sw36771]
  • server provides an initial basis for inferring regulatory relationships, in that the clustering serves...
  • DCL

  • Referenced in 24 articles [sw11087]
  • forecasting IBNR and RBNS claims. A simple relationship between development factors allows to involve ... provide prediction errors and make possible the inference about IBNR and RBNS claims, separately...
  • PlantTFDB

  • Referenced in 4 articles [sw17023]
  • constructing phylogenetic trees, evolutionary relationships among identified TFs were inferred. In addition, PlantTFDB...
  • mmSAR

  • Referenced in 1 article [sw12169]
  • package for multimodel species-area relationship inference. mmSAR is a R package for the modelling ... Species-Area Relationship (SAR). The mmSAR package implements the multimodel SAR paradigm and provides ecologists ... models and calculate multimodel SAR inference...
  • netgwas

  • Referenced in 3 articles [sw21512]
  • model and make the statistical inference regarding complex relationships among variables in multivariate data. They ... construction (Behrouzi and Wit, 2017b), and in inferring the conditional independence network for non-Gaussian...
  • eQTL epistasis

  • Referenced in 1 article [sw34290]
  • eQTL epistasis: detecting epistatic effects and inferring hierarchical relationships of genes in biological pathways. Results ... enable the ability to infer the hierarchical relationships. The proposed method is assessed by simulation...
  • PREvaIL

  • Referenced in 10 articles [sw25073]
  • PREvaIL, an integrative approach for inferring catalytic residues using sequence, structural, and network features ... enzyme is critical to our understanding the relationship between protein sequence, structure, function, and enhancing...
  • DeepDive

  • Referenced in 3 articles [sw16042]
  • used to extract sophisticated relationships between entities and make inferences about facts involving those entities...
  • EI

  • Referenced in 2 articles [sw26226]
  • aggregate (i.e., ”ecological”) data to infer discrete individual-level relationships of interest when individual-level...
  • LOCKSMITH

  • Referenced in 10 articles [sw20224]
  • violations of this pattern. We call the relationship between locks and the locations they protect ... novel constraint-based analysis that infers consistent correlation context-sensitively, using the results to check...
  • perccal

  • Referenced in 2 articles [sw21316]
  • Robust Linear Regression Inference. We consider inference for the parameters of a linear model when ... relationship between response and covariates is possibly non-linear. Conventional inference methods such...
  • latentnet

  • Referenced in 18 articles [sw10550]
  • latent space of characteristics of the actors. Relationships form as a function of distances between ... Tantrum (2007). The package implements Bayesian inference for the models based on an Markov chain...
  • Bayes++

  • Referenced in 1 article [sw20184]
  • functions to represent their relationships. In this form Bayesian inference can be applied and further...
  • FRANz

  • Referenced in 9 articles [sw35294]
  • prior information such as known relationships (sub-pedigrees) or the age and sex of individuals ... empirical dataset with known pedigree. The parentage inference is robust even in the presence...
  • phylodyn

  • Referenced in 3 articles [sw19813]
  • inference that have been developed in recent years. Genealogical data describe the timed ancestral relationships...