• VisualSEEk

  • Referenced in 89 articles [sw13846]
  • novel in that the user forms the queries by diagramming spatial arrangements of color regions ... most similar arrangements of similar regions. Prior to the queries, the system automatically extracts...
  • QBIC

  • Referenced in 36 articles [sw14899]
  • objects that provide useful query functionality, retrieval methods based on similarity as opposed to exact...
  • WoLF PSORT

  • Referenced in 11 articles [sw27721]
  • localization with the most similar localization features to the query, and (ii) tables with detailed ... convenience, sequence alignments of the query to similar proteins and links to UniProt and Gene...
  • gensim

  • Referenced in 18 articles [sw04081]
  • semantic representation, and queried for topical similarity against other documents...
  • FASTA

  • Referenced in 25 articles [sw09655]
  • sequences that share regions of sequence similarity that are separated by variable-length loops. FASTP ... query sequence, or the search will result in a list of sequences with similarity scores ... library that are clearly related to the query sequence has been answered unambiguously. Unfortunately...
  • QPath

  • Referenced in 12 articles [sw35403]
  • employ, the sequence similarity of their constituent proteins to the query proteins, and the reliability...
  • BWA

  • Referenced in 51 articles [sw34374]
  • 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support ... latest, is generally recommended for high-quality queries as it is faster and more accurate...
  • XSEarch

  • Referenced in 28 articles [sw12180]
  • fragments that satisfy the user’s query. Query answers are ranked using extended information-retrieval ... techniques and are generated in an order similar to the ranking. Advanced indexing techniques were...
  • FATCAT

  • Referenced in 3 articles [sw32830]
  • searching for structures similar to a query structure. Many web-based resources for both applications ... FATCAT-search for database searching for structurally similar proteins. Given two protein structures ... corresponding statistical significance of the similarity measured as a P-value. Users can view ... protein structures that are similar to the query, ordered by the P-values. In addition...
  • HHpred

  • Referenced in 7 articles [sw17271]
  • COGs and CDD. It accepts a single query sequence or a multiple alignment as input ... search results in a user-friendly format similar to that of PSI-BLAST. Search options ... scoring secondary structure similarity. HHpred can produce pairwise query-template alignments, multiple alignments...
  • ProbView

  • Referenced in 27 articles [sw09438]
  • strategies can be computed in polynomial time, queries in the positive fragment of the probabilistic ... various containments and equivalences between algebraic expressions, similar in spirit to those in classical algebra ... show that rewriting certain types of queries to other equivalent forms often yields substantial savings...
  • FASTA3

  • Referenced in 7 articles [sw15724]
  • with statistically significant similarity, and thus inferred homology, to a query sequence. Indeed, even ... assigned a function based on significant sequence similarity to a protein of known function...
  • BindingDB

  • Referenced in 7 articles [sw23141]
  • range of query types, including searches by chemical structure, substructure and similarity; protein sequence; ligand ... molecular weight. Data sets generated by BindingDB queries can be downloaded in the form...
  • PITA

  • Referenced in 22 articles [sw06950]
  • PRISM, and others. These languages share a similar distribution semantics, and methods have been devised ... complexity of computing the probability of queries to these general PLP programs is very high...
  • NeMa

  • Referenced in 5 articles [sw18899]
  • NeMa: fast graph search with label similarity. It is increasingly common to find real-life ... networks of labeled, heterogeneous entities. To query these networks, one often needs to identify ... neighborhood-based subgraph matching technique for querying real-life networks. (1) To measure the quality ... unifies both structure and node label similarities. (2) Based on the metric, we formulate...
  • WHIRL

  • Referenced in 11 articles [sw02620]
  • type, similarity reasoning as a built-in predicate, and answers every query with a list...
  • MATLANG

  • Referenced in 5 articles [sw39112]
  • means of linear algebra. Similarly, logic-based graph query languages are commonly used to explore...
  • SAGA

  • Referenced in 6 articles [sw18905]
  • growing need for effective and efficient graph querying methods. Due to the noisy and incomplete ... employs a flexible model for computing graph similarity, which allows for node gaps, node mismatches ... technique that allows it to efficiently evaluate queries even against large graph datasets. Results: SAGA ... used to query biological pathways and literature datasets, which has revealed interesting similarities between distinct...
  • NeTra

  • Referenced in 63 articles [sw14887]
  • segmented image regions to search and retrieve similar regions from the database. A distinguishing aspect ... representation allows the user to compose interesting queries such as “retrieve all images that contain...
  • AquaLog

  • Referenced in 5 articles [sw23489]
  • portable question-answering system which takes queries expressed in natural language and an ontology ... ontology-based relation similarity service to make sense of user queries with respect...