
latentnet
 Referenced in 20 articles
[sw10550]
 model to allow for clustering of the positions developed in Handcock, Raftery, and Tantrum ... also compute maximum likelihood estimates for the latent position model and a twostage maximum ... latent position cluster model. For latent position cluster models, the package provides a Bayesian ... estimates for the coefficients and positions: maximum likelihood estimate, posterior mean, posterior mode...

spcov
 Referenced in 39 articles
[sw12271]
 covariance estimator for multivariate normal data that is sparse and positive definite. Implements the majorize ... Bien, J., and Tibshirani, R. (2011), ”Sparse Estimation of a Covariance Matrix,” Biometrika...

logcondens
 Referenced in 52 articles
[sw11215]
 estimates within cases and controls, including confidence intervals for given values of false positive fractions ... been used to illustrate logconcave density estimation are made available...

DEVEX
 Referenced in 100 articles
[sw08378]
 column weighting factors as a means of estimating gradients for the purpose of selecting ... allowing that a constraint may not be positioned so exactly as its precise representation...

corpor
 Referenced in 22 articles
[sw09381]
 package implements a JamesSteintype shrinkage estimator for the covariance matrix, with separate shrinkage ... large p” data, and always returns a positive definite and wellconditioned covariance matrix ... covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances ... pseudoinverse, and for checking the rank and positive definiteness of a matrix...

DySco
 Referenced in 5 articles
[sw16261]
 Maximum likelihood estimates for positive valued dynamic score models; The DySco package. Recently, the Dynamic ... need for a software package to estimate and evaluate these new models. A straightforward ... DySco) package is introduced for estimating models for positive variables, in which the location/scale evolves...

dd_tools
 Referenced in 9 articles
[sw14334]
 classifiers make (false positive and false negative errors), estimating the ROC curve, the AUC (Area...

logKDE
 Referenced in 3 articles
[sw31519]
 logKDE: Computing LogTransformed Kernel Density Estimates for Positive Data. Computes logtransformed kernel density ... estimates for positive data using a variety of kernels. It follows the methods described...

CIMGS
 Referenced in 12 articles
[sw17583]
 better estimates the complete Cholesky factor as the set of dropped positions gets smaller. CIMGS...

corpcor
 Referenced in 14 articles
[sw10199]
 package implements a JamesSteintype shrinkage estimator for the covariance matrix, with separate shrinkage ... large p” data, and always returns a positive definite and wellconditioned covariance matrix ... covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances ... pseudoinverse, and for checking the rank and positive definiteness of a matrix...

HMMoce
 Referenced in 1 article
[sw27349]
 hidden Markov model (HMM) to improve position estimates. Position estimates are derived by comparing electronic...

CRASP
 Referenced in 2 articles
[sw40576]
 protein sequences. The approach is based on estimation of the correlation coefficient between the values ... physicochemical parameter at a pair of positions of sequence alignment. The program enables the user ... amino acid substitutions at protein sequence positions, estimate the contribution of the coordinated substitutions...

MILES
 Referenced in 2 articles
[sw14734]
 GNSS, for fixing integer ambiguities and estimating positions, a mixed integer least squares problem...

UOBYQA
 Referenced in 67 articles
[sw07576]
 model. The paper addresses the initial positions of the interpolation points and the adjustment ... model and also they provide an estimate of the error of the quadratic approximation...

iLocGpos
 Referenced in 18 articles
[sw22418]
 predicting the subcellular localization of Gram positive bacterial proteins with both singlelocation and multiple ... same stringent benchmark dataset used to estimate the accuracy of GposmPLoc was adopted ... iLocGpos. The dataset contains 519 Grampositive bacterial proteins classified into the following four...

parfm
 Referenced in 12 articles
[sw19053]
 somehow known in advance, the parametric estimation approach can be used advantageously. Nonetheless, there ... positive stable frailty distributions can be specified, together with five different baseline hazards. Parameter estimation ... events in at least one cluster. The positive stable model shows analogous difficulties...

AL2CO
 Referenced in 3 articles
[sw35905]
 Namely, amino acid frequencies at each position are estimated and the conservation index is calculated ... conservation index. Calculating conservation indices for 35522 positions in 284 alignments from SMART database...

trackit
 Referenced in 1 article
[sw27397]
 dusk. The model generates 2 estimated geographic positions per day (at dawn ... dusk) based on light; and 3 estimated positions per day (at dawn, dusk, SST time ... yearly pattern in latitude precision is estimated by propagating the data uncertainties through the geolocation...

stepR
 Referenced in 10 articles
[sw20772]
 jumps nor their positions is known by implementing the multiscale regression estimators SMUCE and HSMUCE...

Polynomials
 Referenced in 4 articles
[sw32226]
 polynomials where we provide standard estimations like absolute positiveness or the more recent approach...