• latentnet

  • Referenced in 20 articles [sw10550]
  • model to allow for clustering of the positions developed in Handcock, Raftery, and Tantrum ... also compute maximum likelihood estimates for the latent position model and a two-stage maximum ... latent position cluster model. For latent position cluster models, the package provides a Bayesian ... estimates for the coefficients and positions: maximum likelihood estimate, posterior mean, posterior mode...
  • spcov

  • Referenced in 39 articles [sw12271]
  • covariance estimator for multivariate normal data that is sparse and positive definite. Implements the majorize ... Bien, J., and Tibshirani, R. (2011), ”Sparse Estimation of a Covariance Matrix,” Biometrika...
  • logcondens

  • Referenced in 52 articles [sw11215]
  • estimates within cases and controls, including confidence intervals for given values of false positive fractions ... been used to illustrate log-concave density estimation are made available...
  • DEVEX

  • Referenced in 100 articles [sw08378]
  • column weighting factors as a means of estimating gradients for the purpose of selecting ... allowing that a constraint may not be positioned so exactly as its precise representation...
  • corpor

  • Referenced in 22 articles [sw09381]
  • package implements a James-Stein-type shrinkage estimator for the covariance matrix, with separate shrinkage ... large p” data, and always returns a positive definite and well-conditioned covariance matrix ... covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances ... pseudoinverse, and for checking the rank and positive definiteness of a matrix...
  • DySco

  • Referenced in 5 articles [sw16261]
  • Maximum likelihood estimates for positive valued dynamic score models; The DySco package. Recently, the Dynamic ... need for a software package to estimate and evaluate these new models. A straightforward ... DySco) package is introduced for estimating models for positive variables, in which the location/scale evolves...
  • dd_tools

  • Referenced in 9 articles [sw14334]
  • classifiers make (false positive and false negative errors), estimating the ROC curve, the AUC (Area...
  • logKDE

  • Referenced in 3 articles [sw31519]
  • logKDE: Computing Log-Transformed Kernel Density Estimates for Positive Data. Computes log-transformed kernel density ... estimates for positive data using a variety of kernels. It follows the methods described...
  • CIMGS

  • Referenced in 12 articles [sw17583]
  • better estimates the complete Cholesky factor as the set of dropped positions gets smaller. CIMGS...
  • corpcor

  • Referenced in 14 articles [sw10199]
  • package implements a James-Stein-type shrinkage estimator for the covariance matrix, with separate shrinkage ... large p” data, and always returns a positive definite and well-conditioned covariance matrix ... covariance matrix the package also provides shrinkage estimators for partial correlations and partial variances ... pseudoinverse, and for checking the rank and positive definiteness of a matrix...
  • HMMoce

  • Referenced in 1 article [sw27349]
  • hidden Markov model (HMM) to improve position estimates. Position estimates are derived by comparing electronic...
  • CRASP

  • Referenced in 2 articles [sw40576]
  • protein sequences. The approach is based on estimation of the correlation coefficient between the values ... physicochemical parameter at a pair of positions of sequence alignment. The program enables the user ... amino acid substitutions at protein sequence positions, estimate the contribution of the coordinated substitutions...
  • MILES

  • Referenced in 2 articles [sw14734]
  • GNSS, for fixing integer ambiguities and estimating positions, a mixed integer least squares problem...
  • UOBYQA

  • Referenced in 67 articles [sw07576]
  • model. The paper addresses the initial positions of the interpolation points and the adjustment ... model and also they provide an estimate of the error of the quadratic approximation...
  • iLoc-Gpos

  • Referenced in 18 articles [sw22418]
  • predicting the subcellular localization of Gram positive bacterial proteins with both single-location and multiple ... same stringent benchmark dataset used to estimate the accuracy of Gpos-mPLoc was adopted ... iLoc-Gpos. The dataset contains 519 Gram-positive bacterial proteins classified into the following four...
  • parfm

  • Referenced in 12 articles [sw19053]
  • somehow known in advance, the parametric estimation approach can be used advantageously. Nonetheless, there ... positive stable frailty distributions can be specified, together with five different baseline hazards. Parameter estimation ... events in at least one cluster. The positive stable model shows analogous difficulties...
  • AL2CO

  • Referenced in 3 articles [sw35905]
  • Namely, amino acid frequencies at each position are estimated and the conservation index is calculated ... conservation index. Calculating conservation indices for 35522 positions in 284 alignments from SMART database...
  • trackit

  • Referenced in 1 article [sw27397]
  • dusk. The model generates 2 estimated geographic positions per day (at dawn ... dusk) based on light; and 3 estimated positions per day (at dawn, dusk, SST time ... yearly pattern in latitude precision is estimated by propagating the data uncertainties through the geolocation...
  • stepR

  • Referenced in 10 articles [sw20772]
  • jumps nor their positions is known by implementing the multiscale regression estimators SMUCE and HSMUCE...
  • Polynomials

  • Referenced in 4 articles [sw32226]
  • polynomials where we provide standard estimations like absolute positiveness or the more recent approach...