• PHYLIP

  • Referenced in 100 articles [sw07694]
  • PHYLIP is a free package of programs for...
  • JAGS

  • Referenced in 209 articles [sw08040]
  • JAGS is Just Another Gibbs Sampler. It is...
  • MAFFT

  • Referenced in 41 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...
  • Soap

  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • EMan

  • Referenced in 8 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...
  • BioNetGen

  • Referenced in 57 articles [sw09072]
  • BioNetGen: software for rule-based modeling of signal...
  • PyMOL

  • Referenced in 40 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...
  • HMMER

  • Referenced in 18 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...
  • bioperl

  • Referenced in 21 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...
  • Sweave

  • Referenced in 44 articles [sw10621]
  • Sweave is a tool that allows to embed...
  • PAML

  • Referenced in 41 articles [sw10916]
  • Phylogenetic Analysis by Maximum Likelihood (PAML). PAML is...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • TASSEL

  • Referenced in 5 articles [sw11446]
  • TASSEL: Software for association mapping of complex traits...
  • SOPRA

  • Referenced in 7 articles [sw12607]
  • SOPRA: scaffolding algorithm for paired reads via statistical...
  • MUSCLE

  • Referenced in 71 articles [sw13193]
  • Muscle: multiple sequence alignment with high accuracy and...
  • GAGE

  • Referenced in 11 articles [sw13528]
  • GAGE: a critical evaluation of genome assemblies and...
  • flowCore

  • Referenced in 11 articles [sw14260]
  • R package flowCore: Basic structures for flow cytometry...