
Gudhi
 Referenced in 43 articles
[sw08777]
 Gudhi Library: Simplicial Complexes and Persistent Homology. We present the main algorithmic and design choices ... simplicial complexes and the computation of persistent homology in the Gudhi library. The Gudhi library ... points, and then compute the persistent homology of these complexes. The simplicial complex and persistent ... representing general (filtered) simplicial complexes. The persistent homology of a filtered simplicial complex is computed...

PersistenceImages
 Referenced in 40 articles
[sw41418]
 Images: A Stable Vector Representation of Persistent Homology. Many datasets can be viewed ... knowledge discovery. One such tool is persistent homology, which provides a multiscale description ... useful representation of this homological information is a persistence diagram (PD). Efforts have been made...

PHAT
 Referenced in 41 articles
[sw08780]
 PHAT  Persistent Homology Algorithms Toolbox. PHAT is a C++ library for the computation of persistent...

javaPlex
 Referenced in 40 articles
[sw08779]
 Stanfordbased Plex family of persistent homology and cohomology software packages. Written in Java ... platform support absolute and relative persistence (co)homology, as well as homcomplexes of simplicial...

Perseus
 Referenced in 31 articles
[sw08778]
 core, the computation of homology  persistent or otherwise  involves performing elementary row and column operations ... linear time while preserving all the underlying homological information. In this talk, we outline ... methods in order to efficiently compute persistent homology of various types of filtered complexes...

Dionysus
 Referenced in 37 articles
[sw09359]
 library for computing persistent homology...

CliqueTop
 Referenced in 29 articles
[sw29766]
 should function automatically without installation: For persistent homology computations, we make use of Perseus...

TDA
 Referenced in 24 articles
[sw15508]
 Tools for the statistical analysis of persistent homology and for density clustering. For that, this...

Holes
 Referenced in 13 articles
[sw15021]
 Holes: python package for persistent homology calculations. The Python module contains various functions to produce ... them through Jython into the JavaPlex persistent homology engine (code.google.com/p/javaplex/)...

Eirene
 Referenced in 11 articles
[sw26097]
 Matroid Filtrations and Computational Persistent Homology. This technical report introduces a novel approach to efficient ... with particular emphasis on computing the persistent homology of a filtered topological cell complex...

jPlex
 Referenced in 11 articles
[sw09851]
 software package for computing persistent homology of finite simplicial complexes, often generated from point cloud...

jHoles
 Referenced in 7 articles
[sw15020]
 complex networks via clique weight rank persistent homology. Complex networks equipped with topological data analysis ... Holes, an algorithms based on persistent homology for studying the connectivity features of complex networks...

SimBa
 Referenced in 10 articles
[sw28063]
 algorithm, called SimBa, for approximating the persistent homology of Rips filtrations with quality guarantees ... algorithm for approximating Rips filtration persistence is order of magnitude faster than existing methods...

Ripser.py
 Referenced in 9 articles
[sw32793]
 Ripser.py is a lean persistent homology package for Python. Building on the blazing fast ... Ripser.py provides an intuitive interface for: computing persistence cohomology of sparse and dense data sets...

RedHom
 Referenced in 12 articles
[sw08776]
 compute Betti numbers, torsion coefficients, homology generators, persistence intervals and maps induced in homology...

RIVET
 Referenced in 6 articles
[sw27770]
 visualization and analysis of twoparameter persistent homology. RIVET was initially designed with interactive visualization ... RIVET also provides functionality for twoparameter persistence computation that should be useful for other ... Betti Numbers of 2Parameter Persistent Homology. Additional papers describing other aspects of RIVET...

Flagser
 Referenced in 5 articles
[sw35628]
 Computing persistent homology of directed flag complexes. We present a new computing package Flagser, designed ... finite directed graph, and compute persistent homology for flexibly defined filtrations on the graph ... resulting complex. The persistent homology computation part of Flagser is based on the program Ripser...

Sophia
 Referenced in 8 articles
[sw34498]
 towers and a streaming algorithm for persistent homology. In this paper the computational problem...

TopologyNet
 Referenced in 8 articles
[sw41013]
 introduce topology, i.e., element specific persistent homology (ESPH), to untangle geometric complexity and biological complexity...

DIPHA
 Referenced in 4 articles
[sw28220]
 DIPHA (A Distributed Persistent Homology Algorithm). This C++ software package computes persistent homology following ... using MPI. For an introduction to persistent homology, see the textbook...