• deal.ii

  • Referenced in 599 articles [sw03516]
  • independent of the space dimension without unreasonable penalties on run-time and memory consumption...
  • gss

  • Referenced in 289 articles [sw06099]
  • family of smoothing methods derived through roughness penalties that are suitable for both univariate ... author presents a comprehensive treatment of penalty smoothing under a unified framework. Methods are developed...
  • sparsenet

  • Referenced in 85 articles [sw19133]
  • package SparseNet: coordinate descent with nonconvex penalties. We address the problem of sparse selection ... linear models. A number of nonconvex penalties have been proposed in the literature for this ... convergence properties. We characterize the properties of penalties suitable for this approach, study their corresponding ... that assists our pathwise algorithm. The MC+ penalty is ideally suited to this task...
  • ClustalW

  • Referenced in 137 articles [sw12016]
  • alignment through sequence weighting, position-specific gap penalties and weight matrix choice...
  • CFSQP

  • Referenced in 61 articles [sw04658]
  • objective functions is replaced by an exact penalty function which penalizes nonlinear equality constraint violations ... either requiring that the objective function (penalty function if nonlinear equality constraints are present) decrease ... nonlinear equality constraints, or an exact penalty function if nonlinear equality constraints are present...
  • Hull

  • Referenced in 76 articles [sw11670]
  • arithmetic when possible, with a moderate speed penalty. (Typically a factor...
  • hgam

  • Referenced in 73 articles [sw11201]
  • Modelling. We propose a new sparsity-smoothness penalty for high-dimensional generalized additive models...
  • OSCAR

  • Referenced in 49 articles [sw03026]
  • penalized least squares with a geometrically intuitive penalty function that shrinks some coefficients to exactly ... zero. Additionally, this penalty yields exact equality of some coefficients, encouraging correlated predictors that have...
  • ipfilter

  • Referenced in 68 articles [sw04778]
  • merit functions and the updating of penalty parameters. This algorithm decomposes the primal-dual step...
  • CAPUSHE

  • Referenced in 53 articles [sw13365]
  • driven method to calibrate such criteria whose penalties are known up to a multiplicative factor...
  • COBYLA2

  • Referenced in 40 articles [sw05136]
  • functions on moving simplices,l_infinity exact penalty function as merit function. Inequality constraints only...
  • SDPEN

  • Referenced in 20 articles [sw05152]
  • Derivative-Free Library - SDPEN: Sequential penalty derivative-free methods for nonlinear constrained optimization. We consider ... derivative-free context a sequential penalty approach for nonlinear programming. This approach consists in solving ... show the viability of the proposed sequential penalty approach...
  • MAPCLUS

  • Referenced in 31 articles [sw20021]
  • mathematical programming optimization procedure based on a penalty function approach, to impose discrete...
  • DFN

  • Referenced in 22 articles [sw36998]
  • variables. Then, we use an exact penalty function to tackle the difficult constraints ... bound-constrained minimization of the proposed exact penalty function. Finally, we use the framework developed...
  • gamsel

  • Referenced in 20 articles [sw19132]
  • Generalized Additive Models. Using overlap grouped lasso penalties, gamsel selects whether a term ... grid of values for the overall penalty lambda, both for gaussian and binomial families...
  • penalized

  • Referenced in 26 articles [sw06071]
  • proportional hazards model with a ridge penalty term. Our approximation method is based...
  • Complex Optimization Toolbox

  • Referenced in 26 articles [sw14744]
  • also possible and is without performance penalty. Included are generalized algorithms for unconstrained nonlinear optimization...
  • Indclus

  • Referenced in 23 articles [sw20757]
  • mathematical programming optimization procedure based on a penalty function approach to impose discrete...
  • SPIRAL

  • Referenced in 22 articles [sw18399]
  • negative log-likelihood objective function with various penalty choices for the regularization terms...
  • GNMT

  • Referenced in 22 articles [sw26579]
  • length-normalization procedure and uses a coverage penalty, which encourages generation of an output sentence...