• spatstat

  • Referenced in 122 articles [sw04429]
  • empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with...
  • RDFTools

  • Referenced in 2 articles [sw30881]
  • computing radial distribution functions and other pair correlation functions from electron diffraction patterns of disordered ... enable quick processing of publication ready, quantitative pair distribution function information. In the development...
  • PFCorr

  • Referenced in 2 articles [sw14194]
  • that maximizes the correlation between a pair of input scalar-valued functions representing molecular structures ... Exhaustive solutions to the rigid-body correlation problem take advantage of the fast Fourier transform...
  • GPfit

  • Referenced in 15 articles [sw14044]
  • model can be numerically unstable if any pair of design points in the input space ... novel parameterization of the spatial correlation function and a new multi-start gradient based optimization...
  • DGCA

  • Referenced in 1 article [sw17777]
  • Contains functions to filter, process, save, visualize, and interpret differential correlations of identifier-pairs across ... Also contains several functions to perform differential correlation analysis on clusters (i.e., modules) or genes...
  • multcompView

  • Referenced in 2 articles [sw16533]
  • correlation, difference, or distance matrix into a display identifying the pairs for which the differences ... conjunction with the output of functions like TukeyHSD, dist{stats}, simint, simtest, csimint, csimtest{multcomp...
  • PSICOV

  • Referenced in 5 articles [sw17010]
  • have major impacts in both structure and function prediction to name but two benefits. Sequence ... contact predictions are usually made by identifying correlated mutations within multiple sequence alignments (MSAs), most ... theoretic approach of calculating mutual information between pairs of sites in proteins. These predictions...
  • EDDA

  • Referenced in 1 article [sw30887]
  • possible. The structure factor and the pair distribution function were especially analysed in relation ... spherical periodic order) and ACO (angular correlated order...
  • QUBIC

  • Referenced in 1 article [sw31455]
  • This package also includes the following related functions: (i) a qualitative representation of the input ... visualization, where different correlation coefficient scores between a pair of genes are provided ... user can easily do following comprehensive functional enrichment analysis (e.g. DAVID) and advanced network visualization...
  • PhyloGibbs

  • Referenced in 2 articles [sw09376]
  • here arises not from the existence of functional sites but simply from the lack ... correlations in the “background” model, an option to search for “dimers” (pairs of motifs with...
  • rmcorr

  • Referenced in 0 articles [sw16571]
  • measures correlation, a statistical technique for determining the overall within-individual relationship among paired measures ... introduced by Bland and Altman (1995). Includes functions for diagnostics, p-value, effect size with...
  • trc

  • Referenced in 1 article [sw30510]
  • similarity between a pair of MS experiments, called truncated rank correlation (TRC). To provide ... calculating correlation. A comprehensive numerical study suggests that TRC outperforms traditional sample correlation and Kendall ... proposed TRC and related functions is available at https://sites.google.com/site/dhyeonyu/software....
  • SSCU

  • Referenced in 1 article [sw25675]
  • mutation rate, and focus only on four pairs of codons with universal translational advantages ... calculated by either op_highly function (by using the highly expressed genes compared with ... optimal codons), or op_corre_CodonW/op_corre_NCprime function (by correlative method developed by Hershberg & Petrov). Users...
  • iLM-2L

  • Referenced in 2 articles [sw16853]
  • role in regulating various protein functions. In order to understand the molecular mechanism of lysine ... using composition of k-spaced amino acid pairs feature coding scheme and support vector machine ... Accuracy of 85.31% and a Matthew’s correlation coefficient of 69.94% for the 1st level...
  • Coq

  • Referenced in 1740 articles [sw00161]
  • Coq is a formal proof management system. It...
  • CSDP

  • Referenced in 193 articles [sw00169]
  • CSDP, A C Library for Semidefinite Programming. This...
  • Gerris

  • Referenced in 242 articles [sw00341]
  • Gerris is a Free Software program for the...
  • gmp

  • Referenced in 255 articles [sw00363]
  • GMP is a free library for arbitrary precision...
  • grasp2k

  • Referenced in 6 articles [sw00379]
  • The grasp2K relativistic atomic structure package. Nature of...
  • HSL

  • Referenced in 260 articles [sw00418]
  • HSL (formerly the Harwell Subroutine Library) is a...