• spatstat

  • Referenced in 107 articles [sw04429]
  • empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with...
  • PFCorr

  • Referenced in 2 articles [sw14194]
  • that maximizes the correlation between a pair of input scalar-valued functions representing molecular structures ... Exhaustive solutions to the rigid-body correlation problem take advantage of the fast Fourier transform...
  • DGCA

  • Referenced in 1 article [sw17777]
  • Contains functions to filter, process, save, visualize, and interpret differential correlations of identifier-pairs across ... Also contains several functions to perform differential correlation analysis on clusters (i.e., modules) or genes...
  • GPfit

  • Referenced in 12 articles [sw14044]
  • model can be numerically unstable if any pair of design points in the input space ... novel parameterization of the spatial correlation function and a new multi-start gradient based optimization...
  • multcompView

  • Referenced in 2 articles [sw16533]
  • correlation, difference, or distance matrix into a display identifying the pairs for which the differences ... conjunction with the output of functions like TukeyHSD, dist{stats}, simint, simtest, csimint, csimtest{multcomp...
  • PSICOV

  • Referenced in 5 articles [sw17010]
  • have major impacts in both structure and function prediction to name but two benefits. Sequence ... contact predictions are usually made by identifying correlated mutations within multiple sequence alignments (MSAs), most ... theoretic approach of calculating mutual information between pairs of sites in proteins. These predictions...
  • PhyloGibbs

  • Referenced in 2 articles [sw09376]
  • here arises not from the existence of functional sites but simply from the lack ... correlations in the “background” model, an option to search for “dimers” (pairs of motifs with...
  • rmcorr

  • Referenced in 0 articles [sw16571]
  • measures correlation, a statistical technique for determining the overall within-individual relationship among paired measures ... introduced by Bland and Altman (1995). Includes functions for diagnostics, p-value, effect size with...
  • SSCU

  • Referenced in 1 article [sw25675]
  • mutation rate, and focus only on four pairs of codons with universal translational advantages ... calculated by either op_highly function (by using the highly expressed genes compared with ... optimal codons), or op_corre_CodonW/op_corre_NCprime function (by correlative method developed by Hershberg & Petrov). Users...
  • iLM-2L

  • Referenced in 2 articles [sw16853]
  • role in regulating various protein functions. In order to understand the molecular mechanism of lysine ... using composition of k-spaced amino acid pairs feature coding scheme and support vector machine ... Accuracy of 85.31% and a Matthew’s correlation coefficient of 69.94% for the 1st level...
  • Coq

  • Referenced in 1526 articles [sw00161]
  • Coq is a formal proof management system. It...
  • CSDP

  • Referenced in 179 articles [sw00169]
  • CSDP, A C Library for Semidefinite Programming. This...
  • Gerris

  • Referenced in 197 articles [sw00341]
  • Gerris is a Free Software program for the...
  • gmp

  • Referenced in 232 articles [sw00363]
  • GMP is a free library for arbitrary precision...
  • grasp2k

  • Referenced in 6 articles [sw00379]
  • The grasp2K relativistic atomic structure package. Nature of...
  • JJGEN

  • Referenced in 1 article [sw00474]
  • JJGEN: A flexible program for generating lists of...
  • LAPACK

  • Referenced in 1504 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Macaulay2

  • Referenced in 1353 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Magma

  • Referenced in 2355 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 4692 articles [sw00545]
  • The result of over 30 years of cutting...