
spatstat
 Referenced in 122 articles
[sw04429]
 empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with...

RDFTools
 Referenced in 2 articles
[sw30881]
 computing radial distribution functions and other pair correlation functions from electron diffraction patterns of disordered ... enable quick processing of publication ready, quantitative pair distribution function information. In the development...

PFCorr
 Referenced in 2 articles
[sw14194]
 that maximizes the correlation between a pair of input scalarvalued functions representing molecular structures ... Exhaustive solutions to the rigidbody correlation problem take advantage of the fast Fourier transform...

GPfit
 Referenced in 15 articles
[sw14044]
 model can be numerically unstable if any pair of design points in the input space ... novel parameterization of the spatial correlation function and a new multistart gradient based optimization...

DGCA
 Referenced in 1 article
[sw17777]
 Contains functions to filter, process, save, visualize, and interpret differential correlations of identifierpairs across ... Also contains several functions to perform differential correlation analysis on clusters (i.e., modules) or genes...

multcompView
 Referenced in 2 articles
[sw16533]
 correlation, difference, or distance matrix into a display identifying the pairs for which the differences ... conjunction with the output of functions like TukeyHSD, dist{stats}, simint, simtest, csimint, csimtest{multcomp...

PSICOV
 Referenced in 5 articles
[sw17010]
 have major impacts in both structure and function prediction to name but two benefits. Sequence ... contact predictions are usually made by identifying correlated mutations within multiple sequence alignments (MSAs), most ... theoretic approach of calculating mutual information between pairs of sites in proteins. These predictions...

EDDA
 Referenced in 1 article
[sw30887]
 possible. The structure factor and the pair distribution function were especially analysed in relation ... spherical periodic order) and ACO (angular correlated order...

QUBIC
 Referenced in 1 article
[sw31455]
 This package also includes the following related functions: (i) a qualitative representation of the input ... visualization, where different correlation coefficient scores between a pair of genes are provided ... user can easily do following comprehensive functional enrichment analysis (e.g. DAVID) and advanced network visualization...

PhyloGibbs
 Referenced in 2 articles
[sw09376]
 here arises not from the existence of functional sites but simply from the lack ... correlations in the “background” model, an option to search for “dimers” (pairs of motifs with...

rmcorr
 Referenced in 0 articles
[sw16571]
 measures correlation, a statistical technique for determining the overall withinindividual relationship among paired measures ... introduced by Bland and Altman (1995). Includes functions for diagnostics, pvalue, effect size with...

trc
 Referenced in 1 article
[sw30510]
 similarity between a pair of MS experiments, called truncated rank correlation (TRC). To provide ... calculating correlation. A comprehensive numerical study suggests that TRC outperforms traditional sample correlation and Kendall ... proposed TRC and related functions is available at https://sites.google.com/site/dhyeonyu/software....

SSCU
 Referenced in 1 article
[sw25675]
 mutation rate, and focus only on four pairs of codons with universal translational advantages ... calculated by either op_highly function (by using the highly expressed genes compared with ... optimal codons), or op_corre_CodonW/op_corre_NCprime function (by correlative method developed by Hershberg & Petrov). Users...

iLM2L
 Referenced in 2 articles
[sw16853]
 role in regulating various protein functions. In order to understand the molecular mechanism of lysine ... using composition of kspaced amino acid pairs feature coding scheme and support vector machine ... Accuracy of 85.31% and a Matthew’s correlation coefficient of 69.94% for the 1st level...

Coq
 Referenced in 1740 articles
[sw00161]
 Coq is a formal proof management system. It...

CSDP
 Referenced in 193 articles
[sw00169]
 CSDP, A C Library for Semidefinite Programming. This...

Gerris
 Referenced in 242 articles
[sw00341]
 Gerris is a Free Software program for the...

gmp
 Referenced in 255 articles
[sw00363]
 GMP is a free library for arbitrary precision...

grasp2k
 Referenced in 6 articles
[sw00379]
 The grasp2K relativistic atomic structure package. Nature of...

HSL
 Referenced in 260 articles
[sw00418]
 HSL (formerly the Harwell Subroutine Library) is a...