• Orange4WS

  • Referenced in 4 articles [sw27294]
  • distributed data sources, the use of data mining algorithms implemented as web services, as well ... ontologies, enabling automated composition of complex knowledge discovery workflows for a given data mining task ... knowledge discovery ontology to describe workflow components (data, knowledge and data mining services...
  • Blast2GO

  • Referenced in 6 articles [sw29668]
  • main purpose of enabling Gene Ontology (GO) based data mining on sequence data for which...
  • RegulonDB

  • Referenced in 53 articles [sw25948]
  • origin of their effectors and by gene ontology class. We have now computational predictions ... RNAs, with their known associated targets. The data can be accessed through overviews of correlations ... searched with the Textpresso text mining engine...
  • OntoSDM

  • Referenced in 1 article [sw11233]
  • OntoSDM, which enables spatial data mining algorithms to communicate with ontologies in order to enhance...
  • zGPS.AO

  • Referenced in 1 article [sw36139]
  • Gamma Poisson Shrinker with AE (Adverse Event) ontology) is based on the zero-inflated negative ... This model handles the adverse event count data with excess zeros and over-dispersion ... found in ”Data Mining in Large Frequency Tables With Ontology, with an Application...
  • THEA

  • Referenced in 2 articles [sw20344]
  • THEA: ontology-driven analysis of microarray data. MOTIVATION: Microarray technology makes it possible to measure ... values under hundreds of conditions. Once microarray data are quantified, normalized and classified, the analysis ... allowing convenient handling of data. It allows to automatically annotate data issued from classification systems ... meaningful generalizations according to statistical criteria (data mining). AVAILABILITY: The software is available...
  • iProLINK

  • Referenced in 1 article [sw01469]
  • provide curated data sources that can be utilized for text mining research in the areas ... named entity recognition, and protein ontology development. The data sources for bibliography mapping and annotation...
  • Ontograte

  • Referenced in 1 article [sw00651]
  • automatic ontology mapping system which leverages object reconciliation and multi-relational data mining techniques...
  • GoSurfer

  • Referenced in 2 articles [sw35672]
  • GoSurfer uses Gene Ontology (GO) information to analyze gene sets obtained from genome-wide computations ... analyses. GoSurfer is a graphical interactive data mining tool. It associates user input genes with...
  • WebGestalt

  • Referenced in 7 articles [sw17514]
  • have developed a web-based integrated data mining system, WebGestalt (http://genereg.ornl.gov/webgestalt/), to help ... sets in various biological contexts, including Gene Ontology, tissue expression pattern, chromosome distribution, metabolic...
  • Fr-ONT

  • Referenced in 2 articles [sw28410]
  • description logic. We devise an algorithm for mining frequent patterns expressed in standard EL++ description ... provides the theorethical foundation for standard Web ontology language OWL, and description logic concepts correspond ... proposed method on a broad range of data and knowledge intensive applications that exploit formal...
  • GraphWeb

  • Referenced in 2 articles [sw20147]
  • GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. GraphWeb is a public ... diverse datasets into global networks; incorporates multispecies data using gene orthology mapping; filters nodes ... algorithms; interprets discovered modules using Gene Ontology, pathways, and cis-regulatory motifs...
  • ORegAnno

  • Referenced in 2 articles [sw18500]
  • another 54 351 identified by text-mining methods. Users can enter or ‘check out’ papers ... more lines of experimental evidence. An evidence ontology was developed to describe and categorize these ... Ensembl or UCSC genome browsers. All data are freely available through search pages, XML data...
  • MiRonTop

  • Referenced in 1 article [sw29581]
  • MiRonTop: mining microRNAs targets across large scale gene expression studies. Summary: Current challenges in microRNA ... integrates DNA microarrays or high-throughput sequencing data to identify the potential implication of miRNAs ... targets and their functional annotations by Gene Ontology. Availability: http://www.microarray.fr:8080/miRonTop/index...
  • Coq

  • Referenced in 1890 articles [sw00161]
  • Coq is a formal proof management system. It...
  • Isabelle

  • Referenced in 713 articles [sw00454]
  • Isabelle is a generic proof assistant. It allows...
  • MapReduce

  • Referenced in 263 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 90 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...