• Pynn

  • Referenced in 15 articles [sw14128]
  • simulator that PyNN supports (currently NEURON, NEST, PCSIM and Brian). The PyNN API aims ... connectivity algorithms (e.g. all-to-all, random, distance-dependent, small-world) but makes it easy...
  • TADtree

  • Referenced in 1 article [sw34257]
  • contact frequencies into a hierarchy of nested TADs. This model is based on empirical distributions ... that the increase in contact enrichment with distance is stronger for the inner TAD than ... TADtree algorithm for detecting hierarchies of nested TADs. TADtree compares favorably with previous methods, finding...
  • MrTADFinder

  • Referenced in 1 article [sw34259]
  • length scales and, in many cases, a nested arrangement. Here, by exploiting the resemblance between ... each genomic bin as well as the distance dependence of the contact frequency...
  • ADOL-C

  • Referenced in 244 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • BoomerAMG

  • Referenced in 170 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • BPMPD

  • Referenced in 40 articles [sw00088]
  • BPMPD is a state-of-the-art implementation...
  • EIGIFP

  • Referenced in 43 articles [sw00235]
  • eigifp is a MATLAB program for computing a...
  • GAP

  • Referenced in 2974 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • GAUSS

  • Referenced in 119 articles [sw00322]
  • The GAUSS Mathematical and Statistical System is a...
  • Gmsh

  • Referenced in 635 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • HSL

  • Referenced in 274 articles [sw00418]
  • HSL (formerly the Harwell Subroutine Library) is a...
  • KNITRO

  • Referenced in 182 articles [sw00490]
  • KNITRO is a solver for nonlinear optimization. It...
  • LAPACK

  • Referenced in 1649 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • LSQR

  • Referenced in 372 articles [sw00530]
  • Algorithm 583: LSQR: Sparse Linear Equations and Least...
  • Macaulay2

  • Referenced in 1758 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Magma

  • Referenced in 3052 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 5199 articles [sw00545]
  • The result of over 30 years of cutting...
  • MapReduce

  • Referenced in 252 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • Mathematica

  • Referenced in 6090 articles [sw00554]
  • Almost any workflow involves computing results, and that...