
Pynn
 Referenced in 15 articles
[sw14128]
 simulator that PyNN supports (currently NEURON, NEST, PCSIM and Brian). The PyNN API aims ... connectivity algorithms (e.g. alltoall, random, distancedependent, smallworld) but makes it easy...

TADtree
 Referenced in 1 article
[sw34257]
 contact frequencies into a hierarchy of nested TADs. This model is based on empirical distributions ... that the increase in contact enrichment with distance is stronger for the inner TAD than ... TADtree algorithm for detecting hierarchies of nested TADs. TADtree compares favorably with previous methods, finding...

MrTADFinder
 Referenced in 1 article
[sw34259]
 length scales and, in many cases, a nested arrangement. Here, by exploiting the resemblance between ... each genomic bin as well as the distance dependence of the contact frequency...

ADOLC
 Referenced in 244 articles
[sw00019]
 ADOLC: Automatic Differentiation of C/C++. We present...

BoomerAMG
 Referenced in 170 articles
[sw00086]
 BoomerAMG: A parallel algebraic multigrid solver and preconditioner...

BPMPD
 Referenced in 40 articles
[sw00088]
 BPMPD is a stateoftheart implementation...

EIGIFP
 Referenced in 43 articles
[sw00235]
 eigifp is a MATLAB program for computing a...

GAP
 Referenced in 2974 articles
[sw00320]
 GAP is a system for computational discrete algebra...

GAUSS
 Referenced in 119 articles
[sw00322]
 The GAUSS Mathematical and Statistical System is a...

Gmsh
 Referenced in 635 articles
[sw00366]
 Gmsh is a 3D finite element grid generator...

HSL
 Referenced in 274 articles
[sw00418]
 HSL (formerly the Harwell Subroutine Library) is a...

KNITRO
 Referenced in 182 articles
[sw00490]
 KNITRO is a solver for nonlinear optimization. It...

LAPACK
 Referenced in 1649 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

LSQR
 Referenced in 372 articles
[sw00530]
 Algorithm 583: LSQR: Sparse Linear Equations and Least...

Macaulay2
 Referenced in 1758 articles
[sw00537]
 Macaulay2 is a software system devoted to supporting...

Magma
 Referenced in 3052 articles
[sw00540]
 Computer algebra system (CAS). Magma is a large...

Maple
 Referenced in 5199 articles
[sw00545]
 The result of over 30 years of cutting...

MapReduce
 Referenced in 252 articles
[sw00546]
 MapReduce is a new parallel programming model initially...

Mathematica
 Referenced in 6090 articles
[sw00554]
 Almost any workflow involves computing results, and that...