• ProMiner

  • Referenced in 5 articles [sw22565]
  • overwhelming for most life science areas. Recognition of life science terminology is a key prerequisite ... names and classes present named entity recognition with a real challenge. ProMiner is a tool ... addresses several fundamental issues in named entity recognition in the field of life sciences: ProMiner ... manualevaluation process; mapping of synonyms to reference names and data sources; context dependent disambiguation...
  • CRF++

  • Referenced in 6 articles [sw10648]
  • variety of NLP tasks, such as Named Entity Recognition, Information Extraction and Text Chunking...
  • GENETAG

  • Referenced in 5 articles [sw35526]
  • GENETAG: a tagged corpus for gene/protein named entity recognition. Results: To ensure heterogeneity ... term similarity to documents with known gene names, and 10K high- and 10K low-scoring ... sentences were run through a gene/protein name tagger, and the results were modified manually ... gene/protein names subject to a specificity constraint, a rule that required the tagged entities...
  • cleanNLP

  • Referenced in 3 articles [sw19465]
  • include tokenization, part of speech tagging, named entity recognition, entity linking, sentiment analysis, dependency parsing...
  • BioCaster

  • Referenced in 3 articles [sw37065]
  • four main stages: topic classification, named entity recognition (NER), disease/location detection and event recognition. Higher...
  • ChemSpot

  • Referenced in 2 articles [sw23131]
  • tools for named entity recognition and classification of chemicals in natural language texts, including trivial ... names, abbreviations, molecular formulas and IUPAC entities. Since ... different classes of relevant entities have rather different naming characteristics, ChemSpot uses a combined approach ... recognition, a classifier model and several methods for consolidating all annotations. ChemSpot also performs named...
  • T-NER

  • Referenced in 1 article [sw41853]
  • Round Python Library for Transformer-based Named Entity Recognition. Language model (LM) pretraining ... many NLP downstream tasks, including named entity recognition (NER). In this paper, we present ... Transformer-based Named Entity Recognition), a Python library for NER LM finetuning. In addition...
  • coreNLP

  • Referenced in 2 articles [sw19466]
  • tokenisation, part of speech tagging, lemmatisation, named entity recognition, coreference detection and sentiment analysis...
  • BioBERT

  • Referenced in 2 articles [sw42265]
  • representative biomedical text mining tasks: biomedical named entity recognition (0.62% F1 score improvement), biomedical relation...
  • BOND

  • Referenced in 1 article [sw41815]
  • BOND: BERT-Assisted Open-Domain Named Entity Recognition with Distant Supervision. We study the open ... domain named entity recognition (NER) problem under distant supervision. The distant supervision, though does...
  • SpanNER

  • Referenced in 1 article [sw39724]
  • have seen the paradigm shift of Named Entity Recognition (NER) systems from sequence labeling ... span prediction model is used for named entity recognition compared with the sequence labeling framework ... system combiner to re-recognize named entities from different systems’ outputs. We experimentally implement...
  • CyNER

  • Referenced in 1 article [sw41828]
  • CyNER: A Python Library for Cybersecurity Named Entity Recognition. Open Cyber threat intelligence (OpenCTI) information ... open-source python library for cybersecurity named entity recognition (NER). CyNER combines transformer-based models...
  • iProLINK

  • Referenced in 1 article [sw01469]
  • bibliography mapping, annotation extraction, protein named entity recognition, and protein ontology development. The data sources ... data sources for entity recognition and ontology development include a protein name dictionary, word token...
  • tagtog

  • Referenced in 1 article [sw33782]
  • used to mark up biological entities (such as genes) and concepts (such as Gene Ontology ... accurate identification of gene symbols and gene names. As part of the BioCreative IV Interactive ... mentions of Drosophila melanogaster gene symbols and names in full-text biomedical articles from ... curation speed. We conclude that tagtog-named entity recognition improves with a larger corpus...
  • GNAT

  • Referenced in 1 article [sw29376]
  • Gnat Java library for text retrieval, named entity recognition, and normalization of gene and protein ... identification of gene and protein names for data analysis. On the BioCreative III test data...
  • TinyMBERT

  • Referenced in 1 article [sw32542]
  • with a focus on multi-lingual Named Entity Recognition (NER). In particular, we study several ... resources, model architecture and inference latency to name a few. We show that our approach...
  • MetaMap Lite

  • Referenced in 1 article [sw39098]
  • MetaMap. MetaMap is a widely used named entity recognition tool that identifies concepts from...
  • DTMiner

  • Referenced in 1 article [sw28776]
  • given gene. DTMiner incorporates name entity recognition (NER), which identifies occurrences of genes and diseases...
  • BERTje

  • Referenced in 1 article [sw37745]
  • tasks (part-of-speech tagging, named-entity recognition, semantic role labeling, and sentiment analysis...
  • BERTweet

  • Referenced in 1 article [sw39094]
  • tasks: Part-of-speech tagging, Named-entity recognition and text classification. We release BERTweet under...