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  • JADE

  • Referenced in 146 articles [sw24855]
  • improve optimization performance by implementing a new mutation strategy ”DE/current-to-pbest” with optional external archive...

  • CMA-ES
  • Referenced in 124 articles [sw05063]
  • namely the repeated interplay of variation (via mutation and recombination) and selection: in each generation...

  • CHARMM
  • Referenced in 120 articles [sw05953]
  • molecules. It performs free energy calculations of mutations and drug binding as well as conformational...

  • quivermutation
  • Referenced in 40 articles [sw13691]
  • Quiver mutation in Java: These java applets implement quiver mutation (and cluster mutation) as invented ... Fomin and A. Zelevinsky in 2000. Quiver mutation is related to a large number ... nodes) and arrows between the vertices. To mutate with respect to a vertex, click ... vertex. To adjust the picture after mutation, drag the vertices. Note that edges...

  • TRANSFAC
  • Referenced in 74 articles [sw17201]
  • modules: PathoDB provides data on pathologically relevant mutations in regulatory regions and transcription factor genes...

  • AAindex
  • Referenced in 47 articles [sw26861]
  • values and AAindex2 for the amino acid mutation matrix of 210 numerical values. Each entry...

  • Pregel
  • Referenced in 40 articles [sw13416]
  • that of its outgoing edges or mutate graph topology. This vertex-centric approach is flexible...

  • Ginsim
  • Referenced in 33 articles [sw09090]
  • experimental perturbations, such as loss-of-function mutations or ectopically induced gene expression...

  • AbYSS
  • Referenced in 22 articles [sw09881]
  • follows the scatter search structure but uses mutation and crossover operators from evolutionary algorithms. AbYSS...

  • CoulombHiggs
  • Referenced in 22 articles [sw16336]
  • basis vectors, study the effect of generalized mutations, and more. The third version 2.1, released...

  • 2D-MH
  • Referenced in 21 articles [sw19727]
  • protein sequences, (4) more sensitive for the mutation sites important for drug targeting...

  • avida
  • Referenced in 18 articles [sw17260]
  • strings of computer code subject to random mutations, adapting to a complex information-rich landscape...

  • muJava
  • Referenced in 9 articles [sw23770]
  • µJava (muJava) is a mutation system for Java programs. It automatically generates mutants for both ... traditional mutation testing and class-level mutation testing. µJava can test individual classes and packages ... limited basis to researchers in mutation analysis; please contact Offutt for more information...

  • PGAPack
  • Referenced in 16 articles [sw04922]
  • replacement. Multiple choices for SELECTION, CROSSOVER, and MUTATION operators Easy integration of hill-climbing heuristics...

  • GAPS
  • Referenced in 14 articles [sw02613]
  • finding the closest symmetric point. Adaptive mutation and crossover probabilities are used. The proposed...

  • KaHIP
  • Referenced in 13 articles [sw19376]
  • that uses KaFFPa to provide combine and mutation operations, as well as KaBaPE which extends...

  • STAR

  • Referenced in 9 articles [sw35644]
  • series of point mutations. An ATR can then be encoded as a number of duplications ... motif together with a list of mutations. Consequently, any sequence that...

  • TopologyNet
  • Referenced in 7 articles [sw41013]
  • binding affinities and protein stability changes upon mutation. To overcome the limitations to deep learning ... protein-ligand binding affinities, globular protein mutation impacts, and membrane protein mutation impacts...

  • SciClone
  • Referenced in 8 articles [sw29660]
  • with subpopulations of neoplastic cells harboring distinct mutations. A fine resolution view of this clonal ... analyzing the variant allele frequencies of somatic mutations. We use it to detect subclones...

  • Leon
  • Referenced in 11 articles [sw09159]
  • Scala, Leon supports imperative constructs such as mutations and loops, using a translation into recursive...