• CGAL

  • Referenced in 394 articles [sw00118]
  • design and modeling, geographic information systems, molecular biology, medical imaging, robotics and motion planning, mesh...
  • KEGG

  • Referenced in 280 articles [sw13866]
  • biological system, such as the cell, the organism and the ecosystem, from genomic and molecular ... computer representation of the biological system, consisting of molecular building blocks of genes and proteins ... that are integrated with the knowledge on molecular wiring diagrams of interaction, reaction and relation ... information (health information) as perturbations to the biological system...
  • PMA

  • Referenced in 130 articles [sw19126]
  • data. Statistical Applications in Genetics and Molecular Biology 8(1): Article...
  • Cell-PLoc

  • Referenced in 90 articles [sw09126]
  • localization of proteins is important to molecular cell biology, proteomics, system biology and drug discovery...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software Suite”. EMBOSS is a free Open Source ... developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically...
  • DrugBank

  • Referenced in 30 articles [sw23876]
  • half devoted to pharmacological, pharmacogenomic and molecular biological data. A number of new data fields...
  • iLoc-Euk

  • Referenced in 37 articles [sw22434]
  • ignored because they usually posses some unique biological functions worthy of our special notice ... become a useful bioinformatics tool for Molecular Cell Biology, Proteomics, System Biology, and Drug Development...
  • Biopython

  • Referenced in 20 articles [sw07357]
  • freely available Python tools for computational molecular biology and bioinformatics. Biopython...
  • iLoc-Animal

  • Referenced in 20 articles [sw22427]
  • many other multi-label problems in molecular biology. As a user-friendly web-server, iLoc...
  • ESPResSo

  • Referenced in 17 articles [sw06335]
  • matter research in physics, chemistry and molecular biology. It can be used to simulate systems...
  • Gromacs

  • Referenced in 125 articles [sw04128]
  • GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations ... also using it for research on non-biological systems, e.g. polymers...
  • iLoc-Plant

  • Referenced in 18 articles [sw22419]
  • become a useful bioinformatics tool for Molecular Cell Biology, Proteomics, Systems Biology, and Drug Development...
  • GEOquery

  • Referenced in 10 articles [sw17285]
  • Microarray technology has become a standard molecular biology tool. Experimental data have been generated...
  • TAMBIS

  • Referenced in 9 articles [sw35771]
  • concepts and their relationships in molecular biology and bioinformatics. Availability: TAMBIS is available...
  • LAMMPS

  • Referenced in 72 articles [sw05952]
  • Atomic/Molecular Massively Parallel Simulator) is a classical molecular dynamics code. LAMMPS can model an ensemble ... gaseous state. It can model atomic, polymeric, biological, metallic, or granular systems using a variety...
  • GeneWays

  • Referenced in 4 articles [sw23128]
  • experimental data in the field of molecular biology calls for efficient automatic methods to capture ... automated selection of articles pertinent to molecular biology, or automated extraction of information using natural ... generation of specialized knowledge bases for molecular biology. GeneWays is an integrated system that combines ... several such subtasks. It analyzes interactions between molecular substances, drawing on multiple sources of information...
  • MCFDR

  • Referenced in 7 articles [sw11180]
  • Monte Carlo multiple testing. Motivation: In molecular biology, as in many other scientific fields...
  • BALL

  • Referenced in 5 articles [sw10727]
  • times in the field of Computational Molecular Biology and Molecular Modeling. BALL (Biochemical Algorithms Library...
  • ABNER

  • Referenced in 6 articles [sw30049]
  • open source software tool for molecular biology text mining. At its core is a machine...
  • pLoc_bal-mHum

  • Referenced in 9 articles [sw27662]
  • fundamental goals in molecular cell biology is to determine their subcellular locations since this information...