• HOPE

  • Referenced in 4 articles [sw32999]
  • potential energy associated with a protein model. The method uses the minimum energy conformation ... conformations determined by a homotopy between the potential energy functions for the two proteins. Ensembles...
  • Vevacious

  • Referenced in 5 articles [sw18239]
  • assumes that a metastable local minimum is realized, one has to ensure that its lifetime ... expression for a one-loop effective potential energy function and finds all the tree-level ... effective potential. The tunneling time from a given input vacuum to the deepest minimum...
  • SCHROED

  • Referenced in 1 article [sw10269]
  • using the constructed IPA potential one can reproduce the experimental energy levels within the accuracy ... successfully tested in case of double minimum potential where the traditional RKR method...
  • ABCRATE

  • Referenced in 2 articles [sw00011]
  • internal coordinates, can return the potential energy and its gradient at that geometry (sample subprograms ... collinear saddle point, which is called the minimum-energy path (MEP). Vibrational modes are treated...
  • MinimumEnergyPoints

  • Referenced in 2 articles [sw34576]
  • obtained from minimizing the energy functional corresponding to Riesz (s)-kernels (k_s(oldsymbol ... boundedness of the kernel simplifies the classical potential-theoretical proof of the asymptotic uniformity ... both the generation of the minimum energy points and the spherical basis functions. Both...
  • RNASurface

  • Referenced in 1 article [sw23120]
  • fast and accurate detection of locally optimal potentially structured RNA segments. MOTIVATION: During the past ... efficiently constructing a matrix of RNA minimum free energies. A wide range of lengths...
  • ANSYS

  • Referenced in 704 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • BoomerAMG

  • Referenced in 196 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • Expokit

  • Referenced in 200 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • GAP

  • Referenced in 3164 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • Gmsh

  • Referenced in 765 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • HSL

  • Referenced in 279 articles [sw00418]
  • HSL (formerly the Harwell Subroutine Library) is a...
  • LAPACK

  • Referenced in 1701 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • LEDA

  • Referenced in 263 articles [sw00509]
  • In the core computer science areas -- data structures...
  • LSQR

  • Referenced in 394 articles [sw00530]
  • Algorithm 583: LSQR: Sparse Linear Equations and Least...
  • Macaulay2

  • Referenced in 1921 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Magma

  • Referenced in 3296 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 5369 articles [sw00545]
  • The result of over 30 years of cutting...