
HOPE
 Referenced in 4 articles
[sw32999]
 potential energy associated with a protein model. The method uses the minimum energy conformation ... conformations determined by a homotopy between the potential energy functions for the two proteins. Ensembles...

Vevacious
 Referenced in 5 articles
[sw18239]
 assumes that a metastable local minimum is realized, one has to ensure that its lifetime ... expression for a oneloop effective potential energy function and finds all the treelevel ... effective potential. The tunneling time from a given input vacuum to the deepest minimum...

SCHROED
 Referenced in 1 article
[sw10269]
 using the constructed IPA potential one can reproduce the experimental energy levels within the accuracy ... successfully tested in case of double minimum potential where the traditional RKR method...

ABCRATE
 Referenced in 2 articles
[sw00011]
 internal coordinates, can return the potential energy and its gradient at that geometry (sample subprograms ... collinear saddle point, which is called the minimumenergy path (MEP). Vibrational modes are treated...

MinimumEnergyPoints
 Referenced in 2 articles
[sw34576]
 obtained from minimizing the energy functional corresponding to Riesz (s)kernels (k_s(oldsymbol ... boundedness of the kernel simplifies the classical potentialtheoretical proof of the asymptotic uniformity ... both the generation of the minimum energy points and the spherical basis functions. Both...

RNASurface
 Referenced in 1 article
[sw23120]
 fast and accurate detection of locally optimal potentially structured RNA segments. MOTIVATION: During the past ... efficiently constructing a matrix of RNA minimum free energies. A wide range of lengths...

ANSYS
 Referenced in 704 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

BoomerAMG
 Referenced in 196 articles
[sw00086]
 BoomerAMG: A parallel algebraic multigrid solver and preconditioner...

CGAL
 Referenced in 394 articles
[sw00118]
 The goal of the CGAL Open Source Project...

Expokit
 Referenced in 200 articles
[sw00258]
 Expokit provides a set of routines aimed at...

GAP
 Referenced in 3164 articles
[sw00320]
 GAP is a system for computational discrete algebra...

Gmsh
 Referenced in 765 articles
[sw00366]
 Gmsh is a 3D finite element grid generator...

HSL
 Referenced in 279 articles
[sw00418]
 HSL (formerly the Harwell Subroutine Library) is a...

LAPACK
 Referenced in 1701 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

LEDA
 Referenced in 263 articles
[sw00509]
 In the core computer science areas  data structures...

LSQR
 Referenced in 394 articles
[sw00530]
 Algorithm 583: LSQR: Sparse Linear Equations and Least...

Macaulay2
 Referenced in 1921 articles
[sw00537]
 Macaulay2 is a software system devoted to supporting...

Magma
 Referenced in 3296 articles
[sw00540]
 Computer algebra system (CAS). Magma is a large...

Maple
 Referenced in 5369 articles
[sw00545]
 The result of over 30 years of cutting...