• Stan

  • Referenced in 292 articles [sw10200]
  • MCMC sampling (NUTS, HMC) and penalized maximum likelihood estimation with Optimization (BFGS). Stan is coded...
  • plfit

  • Referenced in 269 articles [sw23186]
  • empirical data. Our approach combines maximum-likelihood fitting methods with goodness-of-fit tests based...
  • STABLE

  • Referenced in 110 articles [sw04843]
  • stable random variates. It also performs maximum likelihood estimation of stable parameters and some exploratory ... work is described in the paper ”Maximum likelihood estimation of stable parameters”, J. P. Nolan...
  • copula

  • Referenced in 147 articles [sw07944]
  • display. Fitting copula-based models with maximum likelihood method is provided as template examples. With...
  • VGAM

  • Referenced in 105 articles [sw04490]
  • fits many models and distribution by maximum likelihood estimation (MLE) or penalized MLE. Also fits...
  • MLwiN

  • Referenced in 105 articles [sw04837]
  • fitting multilevel models. It uses both maximum likelihood estimation and Markov Chain Monte Carlo (MCMC...
  • rms

  • Referenced in 96 articles [sw04532]
  • right-censored responses, and implements penalized maximum likelihood estimation for logistic and ordinary linear models...
  • fastDNAml

  • Referenced in 94 articles [sw06651]
  • fastDNAml is a program for estimating maximum likelihood phylogenetic trees from nucleotide sequences. Much...
  • Latent GOLD

  • Referenced in 94 articles [sw11673]
  • 1974a, 1974b) who also developed the maximum likelihood algorithm that serves as the basis...
  • RStan

  • Referenced in 85 articles [sw13990]
  • variational approximation, and (optionally penalized) maximum likelihood estimation via optimization. In all three cases, automatic...
  • bnlearn

  • Referenced in 74 articles [sw08265]
  • well as support for parameter estimation (maximum likelihood and Bayesian) and inference, conditional probability queries...
  • RandomFields

  • Referenced in 62 articles [sw08188]
  • value random fields; conditional simulation; kriging; maximum likelihood estimation...
  • GLLAMM

  • Referenced in 62 articles [sw06517]
  • Linear Latent And Mixed Models) by maximum likelihood (see help gllamm after installation). gllamm maximises...
  • PAML

  • Referenced in 42 articles [sw10916]
  • Phylogenetic Analysis by Maximum Likelihood (PAML). PAML is a package of programs for phylogenetic analyses ... protein sequences using maximum likelihood. It is maintained and distributed for academic use free...
  • LogConcDEAD

  • Referenced in 58 articles [sw08080]
  • Arbitrary Dimensions. Computes a log-concave (maximum likelihood) estimator for i.i.d. data in any number...
  • PAUP*

  • Referenced in 57 articles [sw07834]
  • field. With the inclusion of maximum likelihood and distance methods in PAUP...
  • fields

  • Referenced in 56 articles [sw08187]
  • cross validation and also by restricted maximum likelihood. A major feature is that any covariance...
  • AS 154

  • Referenced in 52 articles [sw14113]
  • algorithm for exact maximum likelihood estimation of autoregressive- moving average models by means of Kalman...
  • CDVine

  • Referenced in 52 articles [sw08161]
  • estimated either sequentially or by joint maximum likelihood estimation. Sampling algorithms and plotting methods...
  • logcondens

  • Referenced in 52 articles [sw11215]
  • this package allows to compute the maximum likelihood estimator (MLE) of a density as well...