
PySB
 Referenced in 11 articles
[sw13437]
 libraries of reusable elements (macros) that encode standard biochemical actions. These features promote model transparency...

FOBS
 Referenced in 1 article
[sw13683]
 interface to the external environment, allowing scripting actions to be carried out.par FOBS is structured ... reduced to a core language by macro expansion. Our paper provides an introduction...

BioBrowser
 Referenced in 1 article
[sw00079]
 function of different parts/structures of a macro molecule (protein, DNA, RNA) directly into ... model of the molecule. All these actions are performed on sub structures of the molecules...

Gmsh
 Referenced in 720 articles
[sw00366]
 Gmsh is a 3D finite element grid generator...

Mathematica
 Referenced in 6337 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 13460 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

R
 Referenced in 9810 articles
[sw00771]
 R is a language and environment for statistical...

SageMath
 Referenced in 1970 articles
[sw00825]
 Sage (SageMath) is free, opensource math software...

GLIM
 Referenced in 193 articles
[sw01126]
 GLIM  a system for interactive fitting of generalized...

FreeFem++
 Referenced in 1304 articles
[sw01436]
 FreeFem++ is an implementation of a language dedicated...

Ada95
 Referenced in 293 articles
[sw01753]
 Ada is a structured, statically typed, imperative, wide...

PVS
 Referenced in 629 articles
[sw03484]
 PVS is a verification system: that is, a...

PETSc
 Referenced in 1541 articles
[sw04012]
 The Portable, Extensible Toolkit for Scientiﬁc Computation (PETSc...

FFTW
 Referenced in 540 articles
[sw04126]
 FFTW is a C subroutine library for computing...

FEniCS
 Referenced in 806 articles
[sw04314]
 The FEniCS Project is a collaborative project for...

MersenneTwister
 Referenced in 351 articles
[sw05367]
 Mersenne twister: A 623dimensionally equidistributed uniform pseudo...

GSL
 Referenced in 261 articles
[sw05883]
 The GNU Scientific Library (GSL) is a numerical...

SAS/OR
 Referenced in 7 articles
[sw06279]
 SAS/OR software provides a powerful array of optimization...

SciPy
 Referenced in 753 articles
[sw06293]
 SciPy (pronounced ”Sigh Pie”) is opensource software...