
PROMOTIF
 Referenced in 5 articles
[sw26864]
 beta units and psiloops; disulphide bridges; and mainchain hydrogen bonding patterns. PROMOTIF creates...

ArchPRED
 Referenced in 2 articles
[sw17375]
 candidate loops are inserted in the query protein framework where their side chains are rebuilt ... environment. In the final step remaining candidate loops are ranked by a Zscore that ... observed [ϕ/ψ] main chain dihedral angle propensities. The final loop conformation is built...

LinkProt
 Referenced in 3 articles
[sw34129]
 protein chains and complexes that form links. LinkProt detects deterministic links (with loops closed ... formation of links in networks of protein chains called MacroLinks. Links are presented graphically ... surfaces of minimal area spanned on closed loops. The database presents extensive information about biological...

SUSY Phenomenology toolbox
 Referenced in 7 articles
[sw17832]
 loop renormalization group equations and oneloop corrections to the masses. As an additional feature ... model. Combining all programs provides a closed chain from model building to phenomenology...

LOOPER
 Referenced in 1 article
[sw17376]
 core with loop backbone atoms only. Construction and optimization of the sidechain conformations ... strategy in LOOPER consistently finds near native loop conformations in our validation study...

EFTofPNG
 Referenced in 5 articles
[sw20815]
 final unit serves as a pipeline chain for the obtainment of the final GW templates ... fourth PN order, and the twoloop level. We expect and strongly encourage public development...

ROSE
 Referenced in 4 articles
[sw04891]
 data flow analysis (live variables, defuse chain, reaching definition, alias analysis, etc.), class hierarchy ... function), OpenMP directive lowering, automatic parallelization and loop transformations (a loop optimizer supporting aggressive loop...

TDataFrame
 Referenced in 1 article
[sw30644]
 TDataFrame: functional chains for ROOT data analyses. TDataFrame is a simple and yet powerful ... that can be performed inside the eventloop, while letting users express them...

GSNAP
 Referenced in 1 article
[sw17306]
 extend algorithm using suffix arrays, segment chaining using genomic hash tables, diagonalization using segmental hash ... instructions and eliminate the need for Floop calculations. Enhancements to the functionality...

BioSimulator.jl
 Referenced in 2 articles
[sw28296]
 Julia. Biological systems with intertwined feedback loops pose a challenge to mathematical modeling efforts. Moreover ... stochastic simulation algorithms based on Markov chain theory. We provide the ability to (a) diagram...

Apron
 Referenced in 67 articles
[sw00045]
 Apron: a library of numerical abstract domains for...

ATLAS
 Referenced in 197 articles
[sw00056]
 This paper describes the Automatically Tuned Linear Algebra...

CGAL
 Referenced in 372 articles
[sw00118]
 The goal of the CGAL Open Source Project...

FGb
 Referenced in 244 articles
[sw00286]
 FGb/Gb libraryGb is a program (191 420 lines...

GAP
 Referenced in 3003 articles
[sw00320]
 GAP is a system for computational discrete algebra...

gmp
 Referenced in 274 articles
[sw00363]
 GMP is a free library for arbitrary precision...

Gmsh
 Referenced in 644 articles
[sw00366]
 Gmsh is a 3D finite element grid generator...

Isabelle
 Referenced in 639 articles
[sw00454]
 Isabelle is a generic proof assistant. It allows...

LAPACK
 Referenced in 1654 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...