• TAGster

  • Referenced in 2 articles [sw11869]
  • increasingly rely on the use of linkage disequilibrium (LD) tag SNPs to reduce genotyping costs...
  • lga972

  • Referenced in 1 article [sw35651]
  • design features of two-stage genetic linkage disequilibrium studies that minimize the genotyping burden. Availability...
  • ASPBay

  • Referenced in 1 article [sw23422]
  • properties of causal genetic variants in linkage disequilibrium with genotyped markers. In a first step...
  • LDpred

  • Referenced in 1 article [sw33851]
  • LDpred (Vilhjalmsson et al. 2015; Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores...
  • LocusZoom

  • Referenced in 1 article [sw29110]
  • signal relative to genomic position, local linkage disequilibrium (LD) and recombination patterns and the positions...
  • OmegaPlus

  • Referenced in 1 article [sw34973]
  • whole-genome data based on linkage disequilibrium. The tool is up to two orders...
  • dartR

  • Referenced in 1 article [sw38558]
  • frequency). Advanced filtering is based on Linkage Disequilibrium and HWE (Hardy-Weinberg equilibrium). Other functions...
  • PyPop

  • Referenced in 1 article [sw00746]
  • Hardy-Weinberg equilibrium and patterns of linkage disequilibrium. These statistical results are important to both...
  • GWAPP

  • Referenced in 1 article [sw29292]
  • that includes interactive Manhattan plots and linkage disequilibrium plots. It also facilitates exploratory data analysis...
  • JLIN

  • Referenced in 0 articles [sw38314]
  • JLIN: A java based linkage disequilibrium plotter. Background: A great deal of effort and expense ... complex human disease. Techniques such as Linkage Disequilibrium mapping are being increasingly used to examine ... given analysis. Results: JLIN (Java LINkage disequilibrium plotter) is a software package designed for customisable ... intuitive visualisation of Linkage Disequilibrium (LD) across all common computing platforms. Customisation allows the user...
  • LDtests

  • Referenced in 0 articles [sw15396]
  • package LDtests: Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium. Exact tests for Linkage...
  • epistasis

  • Referenced in 0 articles [sw17801]
  • conditional dependent short- and long-range linkage disequilibrium structure of genomes and thus reveals aberrant...
  • Mathematica

  • Referenced in 6041 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • R

  • Referenced in 8728 articles [sw00771]
  • R is a language and environment for statistical...
  • SPSS

  • Referenced in 635 articles [sw04269]
  • SPSS is a computer program used for survey...
  • PVM

  • Referenced in 307 articles [sw04273]
  • PVM (Parallel Virtual Machine) is a software package...
  • CRAN

  • Referenced in 488 articles [sw04351]
  • R is ‘GNU S’, a freely available language...
  • lattice

  • Referenced in 105 articles [sw04363]
  • R package lattice: Lattice Graphics , Lattice is a...
  • pls

  • Referenced in 31 articles [sw04365]
  • R package pls: Partial Least Squares and Principal...
  • MASS (R)

  • Referenced in 292 articles [sw04479]
  • R package MASS: Support Functions and Datasets for...