
TABI
 Referenced in 32 articles
[sw18194]
 solvated biomolecules described by the linear PoissonBoltzmann equation. The method employs a wellconditioned ... integral equations are discretized by centroid collocation. The linear system is solved by GMRES iteration ... compare results for the PoissonBoltzmann and Poisson equations. We show that the treecode approximation...

AFMPB
 Referenced in 12 articles
[sw08875]
 described an adaptive fast multipole PoissonBoltzmann solver for computing the electrostatics in biomolecules. This ... boundary integral equation of the linearized PoissonBoltzmann equation. Numerical experiments show the efficiency...

MIBPB
 Referenced in 58 articles
[sw08106]
 package for electrostatic analysis. The Poisson–Boltzmann equation (PBE) is an established model ... further accelerates the rate of convergence of linear equation systems resulting from the MIBPB...

TMSmesh
 Referenced in 21 articles
[sw14719]
 surface points by solving a nonlinear equation directly, polygonizes by connecting surface points through ... outputs a triangulated mesh. TMSmesh has a linear complexity with respect to the number ... boundary element solutions of the Poisson−Boltzmann equation, which directly gives rise to a route...

PBAM
 Referenced in 1 article
[sw16459]
 fully analytical solution to the linearized Poisson Boltzmann equation. The PBAM software package includes...

DAFMPB
 Referenced in 1 article
[sw40371]
 biomolecular systems modeled by the linearized PoissonBoltzmann (LPB) equation. DAFMPB first reformulates ... patch scheme [33]. It solves the resulting linear system using GMRES, where it adopts...

PyCosmo
 Referenced in 1 article
[sw21683]
 solution of the EinsteinBoltzmann equations governing the evolution of linear perturbations in the Universe ... based framework to solve this set of equations using a special purpose solver based ... uses a consistency relation of the field equations to adapt the time step and does ... symbolic representation of the EinsteinBoltzmann equation system in PyCosmo provides a convenient interface...

ORB5
 Referenced in 12 articles
[sw10369]
 presented. It solves the gyrokinetic electrostatic equations including zonal flows in axisymmetric magnetic geometry ... present version of the code assumes a Boltzmann electron response on magnetic surfaces. It uses ... against other codes for a selection of linear and nonlinear tests...

DENOVO
 Referenced in 13 articles
[sw18081]
 obtain accurate solutions to the Boltzmann transport equation. Denovo uses the KochBakerAlcouffe parallel ... Krylov methods to solve the withingroup equations. Krylov methods are far more efficient than ... provides diamonddifference, thetaweighted diamonddifference, lineardiscontinuous finite element, trilineardiscontinuous finite element...

FeatLBE
 Referenced in 1 article
[sw31316]
 numerical simulation of the Lattice Boltzmann equation (LBE). In Hübner and Turek (Computing ... intensity had been proposed for radiative transfer equations which we adapt here ... analogous (semidiscretized) integrodifferential equation with constant characteristics. Thus, we combine an efficient finite ... shortcharacteristic upwinding, we obtain an efficient linear solver for transport dominated configurations (macroscopic Stokes...

BEMLIB
 Referenced in 115 articles
[sw00005]
 BEMLIB is a boundaryelement software library of...

FIDAP
 Referenced in 37 articles
[sw00006]
 FIDAP (A Fluid Dynamics Analysis Program). This paper...

ADOLC
 Referenced in 257 articles
[sw00019]
 ADOLC: Automatic Differentiation of C/C++. We present...

ANSYS
 Referenced in 713 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

ATLAS
 Referenced in 199 articles
[sw00056]
 This paper describes the Automatically Tuned Linear Algebra...

BoomerAMG
 Referenced in 200 articles
[sw00086]
 BoomerAMG: A parallel algebraic multigrid solver and preconditioner...

CASA
 Referenced in 111 articles
[sw00108]
 CASA is a specialpurpose system for computational...

CGAL
 Referenced in 402 articles
[sw00118]
 The goal of the CGAL Open Source Project...

Chaste
 Referenced in 54 articles
[sw00122]
 Chaste: incorporating a novel multiscale spatial and...