• NetQuest

  • Referenced in 5 articles [sw13969]
  • NetQuest, a flexible framework for large-scale network measurement. We apply Bayesian experimental design ... maximize the amount of information we gain about the network path properties subject to given...
  • BrainNet Viewer

  • Referenced in 8 articles [sw26512]
  • interface (GUI), we developed a graph-theoretical network visualization toolbox, called BrainNet Viewer, to illustrate ... several combinations of defined files with connectome information can be loaded to display different combinations ... such as the color and size of network elements or the layout of the figure ... edges in sequence and displays brain networks in multiple views, as required by the user...
  • MMG

  • Referenced in 4 articles [sw29328]
  • method can easily incorporate information about weights in the network, is robust against missing data...
  • PSICOV

  • Referenced in 5 articles [sw17010]
  • best performing normalized mutual information approach and Bayesian networks. For 118 out of 150 targets...
  • CFinder

  • Referenced in 24 articles [sw12379]
  • show that in gene (protein) association networks CFinder can be used to predict the function ... downloaded from http://angel.elte.hu/clustering. Supplementary information: Supplementary data are available on Bioinformatics online. Contact...
  • L-GRAAL

  • Referenced in 2 articles [sw34161]
  • largest common sub-graphs between the networks, as measured by edge-correctness and symmetric ... scores, which allow transferring more functional information across networks. We assess the biological quality ... addition, we illustrate on the PPI networks of baker’s yeast and human the ability ... first to show that topological information is more important than sequence information for uncovering functionally...
  • NETAL

  • Referenced in 3 articles [sw34152]
  • global alignment of protein–protein interaction networks. It uses a greedy method, based ... from both biological and topological information of input networks to find the best global network...
  • SELP

  • Referenced in 3 articles [sw22586]
  • clustering. With the increasing size of social networks in the real world, community detection approaches ... take advantage of the prior information about the network structure which is very common ... that it can effectively use limited supervised information to guide the detection process. The prior...
  • SOM

  • Referenced in 60 articles [sw07375]
  • environment, but the tools in its neural networks toolbox for SOM were not really ... have been employed in the Laboratory of Information and Computer Science in the Helsinki University...
  • XGobi

  • Referenced in 32 articles [sw11752]
  • data analysis language S, the geographic information system (GIS) Arc View™, and the interactive multidimensional ... ability to run across a network...
  • dynamicnetwork

  • Referenced in 2 articles [sw25684]
  • longitudinal network survey data and the dynamic network outputs of the statnet ERGMs has demonstrated ... structures for expressing, storing, and manipulating information about networks that change in time. Motivated...
  • EmNet/NIS

  • Referenced in 1 article [sw01548]
  • European subject-oriented information network for mathematical sciences in Siberia: EmNet/NIS...
  • PaxDb

  • Referenced in 1 article [sw29371]
  • introduce a meta-resource dedicated to integrating information on absolute protein abundance levels; we place ... consistency against externally provided protein-network information, and demonstrate that our weighted integration exhibits more...
  • JAM

  • Referenced in 1 article [sw32391]
  • JavaScript Agent Machine. Heterogeneous information networks require a unified agent processing platform, which...
  • DREAM4

  • Referenced in 4 articles [sw36908]
  • DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models. Conclusion/Significance...
  • ARACNe-AP

  • Referenced in 2 articles [sw34267]
  • inference of mutual information. The accurate reconstruction of gene regulatory networks from large scale molecular ... Algorithm for the Reconstruction of Accurate Cellular Networks (ARACNe) represents one of the most effective ... Partitioning strategy (AP) for estimating the Mutual Information. The new AP implementation (ARACNe-AP) achieves ... methodology, while preserving the Mutual Information estimator and the Network inference accuracy of the original...
  • S-RIP

  • Referenced in 3 articles [sw02570]
  • being adapted to emerging wireless ad hoc networks. However, it is well-known that existing ... node can uncover inconsistent routing information in a network with many misbehaving nodes assuming...
  • SBGN

  • Referenced in 2 articles [sw36914]
  • between biochemical entities in a network. It omits information about the state transitions of entities...
  • MIDER

  • Referenced in 2 articles [sw20089]
  • MIDER - a toolbox for network inference. MIDER (Mutual Information Distance and Entropy Reduction ... structures. It has been developed with biological networks in mind, but can be applied ... using an entropic measure based on mutual information, which takes into account time delays...
  • Cellnoptr

  • Referenced in 5 articles [sw15114]
  • CellNOpt uses information on signaling pathways encoded as a Prior Knowledge Network, and trains...