• CRAN

  • Referenced in 473 articles [sw04351]
  • project homepage for further information. CRAN is a network of ftp and web servers around...
  • Datalog

  • Referenced in 282 articles [sw20023]
  • found new application in data integration, information extraction, networking, program analysis, security, and cloud computing...
  • KEGG

  • Referenced in 260 articles [sw13866]
  • proteins (genomic information) and chemical substances (chemical information) that are integrated with the knowledge ... diagrams of interaction, reaction and relation networks (systems information). It also contains disease and drug...
  • Graphs

  • Referenced in 104 articles [sw12277]
  • with a network (graph). A so-called preprocessing algorithm may compute certain information (a data ... many applications in areas such as transportation, networking, and social science, this problem has been ... database and information systems researchers investigate materialization tradeoffs, query processing on spatial networks, and reachability...
  • ARACNE

  • Referenced in 35 articles [sw17200]
  • wider range of network deconvolution problems. This method uses an information theoretic approach to eliminate ... Results: We prove that ARACNE reconstructs the network exactly (asymptotically) if the effect of loops ... Networks. Application to the deconvolution of genetic networks in human B cells demonstrates ARACNE ... effects of misestimation of mutual information on network reconstruction, and show that algorithms based...
  • AntNet

  • Referenced in 66 articles [sw11975]
  • agents, concurrently explore the network and exchange collected information. The communication among the agents...
  • SNDlib

  • Referenced in 69 articles [sw00884]
  • source of information and resources related to fixed network design, and to provide a contact...
  • MPICH-G2

  • Referenced in 35 articles [sw02373]
  • collective operations, are configured to exploit network topology information. The library also exploits MPI constructs ... level discovery of, and adaptation to, both network topology and network quality-of-service mechanisms...
  • Graphviz

  • Referenced in 84 articles [sw01283]
  • representing structural information as diagrams of abstract graphs and networks. It has important applications...
  • MCODE

  • Referenced in 47 articles [sw35748]
  • relevant for protein networks. Protein interaction and complex information from the yeast Saccharomyces cerevisiae ... evaluation. Conclusion: Dense regions of protein interaction networks can be found, based solely on connectivity...
  • SA-cluster

  • Referenced in 9 articles [sw06867]
  • Clustering large attributed information networks: an efficient incremental computing approach In recent years, many information...
  • MicroGrid

  • Referenced in 11 articles [sw09654]
  • virtual Grid environment – accurately modeling networks, resources, the information services (resource and network metadata) transparently ... exploiting a range of static network and dynamic application information. The best of these, profile ... scales well to online simulation of large networks of 6,000 nodes using 24 simulation...
  • minet

  • Referenced in 7 articles [sw08432]
  • Package for Inferring Large Transcriptional Networks Using Mutual Information. Results: This paper presents the R/Bioconductor ... functions to infer mutual information networks from a dataset. Once fed with a microarray dataset...
  • GeneRank

  • Referenced in 16 articles [sw27064]
  • properties. It combines gene expression information with a network structure derived from gene annotations (gene...
  • Alchemy

  • Referenced in 11 articles [sw16040]
  • classification; Link prediction; Entity resolution; Social network modeling; Information extraction...
  • STRING

  • Referenced in 28 articles [sw23938]
  • scored and integrated, resulting in comprehensive protein networks covering >1100 organisms. Here, we describe ... automated mining of scientific texts for interaction information, to now also include full-text articles ... users with statistical information on any functional enrichment observed in their networks...
  • Inc-cluster

  • Referenced in 4 articles [sw06866]
  • Clustering large attributed information networks: an efficient incremental computing approach In recent years, many information...
  • TRANSYT-7F

  • Referenced in 12 articles [sw20614]
  • Traffic Network Study Tool. TRANSYT-7F release 11 features genetic algorithm optimization of cycle length ... Click on the hyperlinks below for more information...
  • GNA

  • Referenced in 23 articles [sw35974]
  • networks of biological interest, the user of GNA specifies inequality constraints. This information is sufficient ... that describes the qualitative dynamics of the network. The simulator has been implemented in Java...
  • iDrug-Target

  • Referenced in 13 articles [sw22415]
  • target proteins in cellular networking via benchmark dataset optimization approach. Information about the interactions ... drug compounds with proteins in cellular networking is very important for drug development. Unfortunately ... interactive pairs often contain the most important information for drug design, it is necessary...