• BacSim

  • Referenced in 22 articles [sw17261]
  • BacSim, a simulator for individual-based modeling of bacterial colony growth. The generic, quantitative, spatially ... explicit, individual-based model BacSim was developed to simulate growth and behaviour of bacteria...
  • EpiSimdemics

  • Referenced in 7 articles [sw36952]
  • large, realistic social contact networks using individual-based models. EpiSimdemics is an interaction-based simulation ... scale well, limiting the use of individual-based models to very small populations. EpiSimdemics...
  • iDynoR

  • Referenced in 9 articles [sw11206]
  • purpose is to model and simulate microbial communities in an individual-based ... paper ”iDynoMiCS: next-generation individual-based modelling of biofilms” by Lardon et al, published...
  • simecol

  • Referenced in 11 articles [sw04498]
  • differential equations, individual-based (or agent-based) and other models as well. The package helps...
  • BEESCOUT

  • Referenced in 2 articles [sw41037]
  • imported, which is interpreted by the model as a “forage map” with certain colours representing ... relative to a bee colony. An individual-based model then determines the detection probabilities...
  • MASyV

  • Referenced in 2 articles [sw16488]
  • cellular automata, or agent-based or individual-based models, without the need for the user...
  • Capsis

  • Referenced in 1 article [sw41532]
  • provides an open and modular software architecture based on various components, allowing to run forest ... shown with the Samsara2 model, an individual-based and spatialised tree model. Capsis has been...
  • hybridModels

  • Referenced in 2 articles [sw33830]
  • dynamic networks. It is a metapopulation model in which each node in the network ... /annurev.physchem.58.032806.104637>) and individual-based approach, respectively. Equations that models spread within nodes are customizable...
  • vortexR

  • Referenced in 0 articles [sw19435]
  • software for the development of individual-based model for population dynamic simulation (see <
  • IASM

  • Referenced in 1 article [sw26320]
  • advanced activity space models in empirical research. IASM provides individual-based and context-sensitive tools ... home range distances, delineate activity spaces, and model place exposures using individualized geographical data...
  • VORTEX

  • Referenced in 3 articles [sw19436]
  • Viability Analysis software. Vortex is an individual-based simulation of deterministic forces as well ... stochastic events on wildlife populations. It can model many of the extinction vortices that...
  • INDEMICS

  • Referenced in 1 article [sw11330]
  • implementation of Indemics (Interactive Epidemic Simulation) -- a modeling environment utilizing high-performance computing technologies ... represent and analyze policy-based as well as individual-based adaptive interventions. Users can also...
  • SiMRiv

  • Referenced in 1 article [sw15872]
  • analyze individual-based spatially-explicit simulations of multi-state movements in heterogeneous landscapes, based ... trajectories can then be used as null models to test e.g. for species site fidelity...
  • Chaste

  • Referenced in 52 articles [sw00122]
  • Chaste: incorporating a novel multi-scale spatial and...
  • Maple

  • Referenced in 5363 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6337 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13460 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9810 articles [sw00771]
  • R is a language and environment for statistical...