
FALCON
 Referenced in 1 article
[sw26930]
 site relationships) and species interactions (plantpollinator and hostparasite networks). Multiple methods have been...

Mathematica
 Referenced in 6445 articles
[sw00554]
 Almost any workflow involves computing results, and that...

R
 Referenced in 10196 articles
[sw00771]
 R is a language and environment for statistical...

Graphviz
 Referenced in 93 articles
[sw01283]
 Graphviz is open source graph visualization software. Graph...

Bioconductor
 Referenced in 328 articles
[sw04205]
 Bioconductor provides tools for the analysis and comprehension...

deSolve
 Referenced in 68 articles
[sw04499]
 R package deSolve: General solvers for initial value...

gplots
 Referenced in 8 articles
[sw04555]
 gplots: Various R Programming Tools for Plotting Data...

ape
 Referenced in 63 articles
[sw04569]
 R package ape: Analyses of Phylogenetics and Evolution...

PLINK
 Referenced in 68 articles
[sw04581]
 PLINK is a free, opensource whole genome...

gcrma
 Referenced in 101 articles
[sw06104]
 Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...

CL_MATCONTL
 Referenced in 11 articles
[sw06523]
 MATLAB continuation software package CL_MATCONTL The study...

edgeR
 Referenced in 53 articles
[sw06936]
 edgeR: a Bioconductor package for differential expression analysis...

igraph
 Referenced in 215 articles
[sw07066]
 igraph is a software package for complex network...

WGCNA
 Referenced in 26 articles
[sw07123]
 R package WGCNA: Weighted Correlation Network Analysis. Functions...

BoolNet
 Referenced in 18 articles
[sw07365]
 BoolNet: Generation, reconstruction, simulation and analysis of synchronous...

Cytoscape
 Referenced in 81 articles
[sw09080]
 Cytoscape: A Software Environment for Integrated Models of...

diffEq
 Referenced in 50 articles
[sw11101]
 diffEq: Functions from the book Solving Differential Equations...

COPASI
 Referenced in 71 articles
[sw12253]
 COPASI: biochemical network simulator. COPASI is a software...

Dynagraph
 Referenced in 15 articles
[sw13656]
 The Dynagraph libraries are written in platformneutral...