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  • FALCON

  • Referenced in 1 article [sw26930]
  • site relationships) and species interactions (plant-pollinator and host-parasite networks). Multiple methods have been...

  • Mathematica
  • Referenced in 6445 articles [sw00554]
  • Almost any workflow involves computing results, and that...

  • R
  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...

  • Graphviz
  • Referenced in 93 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...

  • Bioconductor
  • Referenced in 328 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • deSolve
  • Referenced in 68 articles [sw04499]
  • R package deSolve: General solvers for initial value...

  • gplots
  • Referenced in 8 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...

  • ape
  • Referenced in 63 articles [sw04569]
  • R package ape: Analyses of Phylogenetics and Evolution...

  • PLINK
  • Referenced in 68 articles [sw04581]
  • PLINK is a free, open-source whole genome...

  • gcrma
  • Referenced in 101 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...

  • CL_MATCONTL
  • Referenced in 11 articles [sw06523]
  • MATLAB continuation software package CL_MATCONTL The study...

  • edgeR
  • Referenced in 53 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...

  • igraph
  • Referenced in 215 articles [sw07066]
  • igraph is a software package for complex network...

  • WGCNA
  • Referenced in 26 articles [sw07123]
  • R package WGCNA: Weighted Correlation Network Analysis. Functions...

  • BoolNet
  • Referenced in 18 articles [sw07365]
  • BoolNet: Generation, reconstruction, simulation and analysis of synchronous...

  • Cytoscape
  • Referenced in 81 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...

  • diffEq
  • Referenced in 50 articles [sw11101]
  • diffEq: Functions from the book Solving Differential Equations...

  • COPASI
  • Referenced in 71 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...

  • Dynagraph
  • Referenced in 15 articles [sw13656]
  • The Dynagraph libraries are written in platform-neutral...