• MUSCLE

  • Referenced in 72 articles [sw13193]
  • high accuracy and high throughput. We describe MUSCLE, a new computer program for creating multiple...
  • Open Science Grid

  • Referenced in 17 articles [sw38501]
  • sites”) using a distributed fabric of high throughput computational services. The OSG does...
  • iHSP-PseRAAAC

  • Referenced in 16 articles [sw25193]
  • highly desirable to develop a high-throughput computational tool in this regard. To take...
  • HTCondor

  • Referenced in 5 articles [sw20807]
  • evaluate mechanisms and policies that support High Throughput Computing (HTC) on large collections of distributively ... computing environment, the Center for High Throughput Computing at UW-Madison has been building...
  • FireWorks

  • Referenced in 5 articles [sw28739]
  • FireWorks, a workflow software for running high-throughput calculation workflows at supercomputing centers. FireWorks ... over 50 million CPU-hours worth of computational chemistry and materials science calculations ... been designed to serve the demanding high-throughput computing needs of these applications, with extensive ... features are highly relevant to enabling modern data-driven and high-throughput science applications...
  • BaCelLo

  • Referenced in 9 articles [sw17174]
  • eukaryotic cells with experimental high-throughput procedures. Computational procedures are then needed for annotating...
  • AFLOW

  • Referenced in 4 articles [sw35507]
  • automatic framework for high-throughput materials discovery. Recent advances in computational materials science present novel ... classification of the relevant computational data by high-throughput methods. In this paper we present ... Automatic Flow), a software framework for high-throughput calculation of crystal structure properties of alloys ... Automatic Flow), a software framework for high-throughput materials. We describe standards and automatic correction...
  • iRSpot-GAEnsC

  • Referenced in 4 articles [sw25197]
  • accurate, fast, robust, and high-throughput automated computational model. In this model, the numerical descriptors...
  • MPInterfaces

  • Referenced in 1 article [sw27045]
  • Materials Project based Python Tool for High-Throughput Computational Screening of Interfacial Systems. A Materials ... been developed to automate the high-throughput computational screening and study of interfacial systems ... package leverages existing open-source high-throughput tools and extends their capabilities towards the understanding ... demonstrate how the package enables high-throughput computational screening of advanced materials, directly contributing...
  • CCS

  • Referenced in 2 articles [sw18589]
  • often not only used for high-throughput computing in time-sharing mode but also...
  • BEAGLE

  • Referenced in 4 articles [sw12586]
  • evolution, these approaches remain computationally demanding. High-throughput sequencing can yield data for thousands ... scaling to such problems using serial computing often necessitates the use of nonstatistical or approximate ... opportunity to leverage their excellent floating-point computational performance to accelerate statistical phylogenetic inference ... make more effective use of available computer hardware, including GPUs. Adoption of a common library...
  • RegulonDB

  • Referenced in 51 articles [sw25948]
  • gene ontology class. We have now computational predictions for σ54 and five different promoter types ... mapped promoters coming from our own high-throughput mapping efforts. RegulonDB v.6.0 now expands beyond...
  • Cytoscape

  • Referenced in 75 articles [sw09080]
  • integrating biomolecular interaction networks with high-throughput expression data and other molecular states into ... architecture, allowing rapid development of additional computational analyses and features. Several case studies of Cytoscape...
  • CULA

  • Referenced in 11 articles [sw12745]
  • computers is a highly parallel math processor capable of nearly 1 TFLOPS peak throughput ... excellent FLOPS/watt ratio. High-level linear algebra operations are computationally intense, often requiring...
  • SimPrily

  • Referenced in 1 article [sw32668]
  • SimPrily: A Python framework to simplify high-throughput genomic simulations. Genomic simulations are an important ... simulations and manipulating large loci can present computational challenges. We present ... SimPrily, a Python tool optimized for high throughput computing (HTC), which facilitates simulation of whole ... include with SimPrily high-throughput workflows that leverage free computing resources through the Open Science...
  • Stargazer

  • Referenced in 1 article [sw33633]
  • because they offer massive parallelism for high-throughput computing. While GPUs promise high peak performance...
  • BioDCV

  • Referenced in 1 article [sw09509]
  • BioDCV is a distributed computing system for the complete validation for gene profiles. the system ... particular, the BioDCV system supports the high throughput computing (HTC) needed to build predictive classification...
  • MultiPhyl

  • Referenced in 3 articles [sw29738]
  • MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. With the number of fully sequenced ... computer. Distributed computing refers to a method of combining the computing power of multiple computers ... high-throughput implementation of a distributed phylogenetics platform, MultiPhyl, capable of using the idle computational...
  • XeFlow

  • Referenced in 1 article [sw35254]
  • platform. Nowadays, GPUs have achieved high throughput computing by running plenty of threads. However, owing...
  • MiRFinder

  • Referenced in 3 articles [sw29577]
  • machine) to build a high throughput and good performance computational pre-miRNA prediction tool called...