
PETSc
 Referenced in 1227 articles
[sw04012]
 parallel matrix and vector assembly routines. The library is organized hierarchically, enabling users to employ...

impute
 Referenced in 99 articles
[sw14376]
 complete matrix of gene array values as input. For example, methods such as hierarchical clustering...

ADVI
 Referenced in 26 articles
[sw34040]
 MCMC sampling across hierarchical generalized linear models, nonconjugate matrix factorization, and a mixture model...

TRIC
 Referenced in 47 articles
[sw02165]
 computation of a sparse 9 by 9 matrix. The element formulation departs from conventional Cartesian ... derived. The kinematics of the element are hierarchically decomposed into 6 rigidbody ... straining modes of deformation. A simple congruent matrix operation transforms the elemental natural stiffness matrix...

SmartPLS
 Referenced in 23 articles
[sw10491]
 importanceperformance matrix analysis (IPMA), multigroup analysis (MGA), hierarchical component models secondorder models...

HLIBCov
 Referenced in 4 articles
[sw22365]
 HLIBCov: Parallel Hierarchical Matrix Approximation of Large Covariance Matrices and Likelihoods with Applications in Parameter...

hlib
 Referenced in 70 articles
[sw04080]
 HLib is a library for hierarchical matrices that was written by Lars Grasedyck and Steffen ... library contains functions for H and H2matrix arithmetics, the treatment of partial differential equations...

HierNMF2
 Referenced in 4 articles
[sw34622]
 Hierarchical rank2 nonnegative matrix factorization (HierNMF2) is an unsupervised algorithm for largescale document ... Park, Fast rank2 nonnegative matrix factorization for hierarchical document clustering...

STARSH
 Referenced in 1 article
[sw30066]
 Hierarchical computations. It provides a hierarchical matrix market in order to benchmark performance of various ... libraries for hierarchical matrix compressions and computations (including itself). Why hierarchical matrices? Because such matrices ... assessing accuracy and performance of hierarchical matrix libraries on a given hardware architecture environment. STARS...

GOFMM
 Referenced in 1 article
[sw38979]
 hierarchical lowrank approximation, ”compression,” of an arbitrary dense symmetric positive definite (SPD) matrix ... even N time, where N is the matrix size. Compression requires NlogN storage and work ... scheme belongs to the family of hierarchical matrix approximation methods. In particular, it generalizes ... sharedmemory parallel scheme for hierarchical matrix computations that reduces synchronization barriers. We present results...

elsA
 Referenced in 35 articles
[sw07602]
 central space discretization with scalar or matrix artificial dissipation on multiblock structured meshes ... achieved in elsA through patched grid, Hierarchical Mesh Refinement and Chimera techniques. The discrete equations...

LOBPCG
 Referenced in 32 articles
[sw09638]
 where standard approaches to the solution of matrix eigenvalue problems fail due to the exponentially ... format. In this paper, we use the hierarchical Tucker decomposition to develop a lowrank...

hmglib
 Referenced in 1 article
[sw32904]
 entirely GPUbased implementation of the hierarchical (H) matrix approach. H matrices approximate specific dense...

Secator
 Referenced in 2 articles
[sw12606]
 principle of an ascending hierarchical method using a distance matrix based on a multiple alignment...

NUMATH
 Referenced in 5 articles
[sw00639]
 methods of numerical mathematics. With remarks on matrix processor variants A general description ... hierarchical structure: problem oriented solvers, method oriented primary routines and basic modulus for matrix...

HASP
 Referenced in 4 articles
[sw23782]
 hierarchical algorithm for making sparse matrices sparser. If A is the (sparse) coefficient matrix ... pass approach to solve SP called the Hierarchical Algorithm. In this paper we report...

HEWN
 Referenced in 3 articles
[sw02189]
 vertices is hierarchical and each edge is attached by a guiding matrix that reflects those...

gRbase
 Referenced in 12 articles
[sw10198]
 standard matrix or a sparse matrix). Some graph algorithms are: (i) maximum cardinality search ... testing for conditional independence. gRbase illustrates how hierarchical loglinear models (hllm) may be implemented...

OXBench
 Referenced in 7 articles
[sw22988]
 algorithms may be judged. RESULTS: The simple hierarchical multiple alignment algorithm, AMPS, performed as well ... CLUSTALW once the PAM250 pairscore matrix was replaced by a BLOSUM series matrix. AMPS...

OMA
 Referenced in 3 articles
[sw34207]
 Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous...