• PETSc

  • Referenced in 1218 articles [sw04012]
  • parallel matrix and vector assembly routines. The library is organized hierarchically, enabling users to employ...
  • impute

  • Referenced in 99 articles [sw14376]
  • complete matrix of gene array values as input. For example, methods such as hierarchical clustering...
  • ADVI

  • Referenced in 26 articles [sw34040]
  • MCMC sampling across hierarchical generalized linear models, nonconjugate matrix factorization, and a mixture model...
  • TRIC

  • Referenced in 47 articles [sw02165]
  • computation of a sparse 9 by 9 matrix. The element formulation departs from conventional Cartesian ... derived. The kinematics of the element are hierarchically decomposed into 6 rigid-body ... straining modes of deformation. A simple congruent matrix operation transforms the elemental natural stiffness matrix...
  • SmartPLS

  • Referenced in 24 articles [sw10491]
  • importance-performance matrix analysis (IPMA), multi-group analysis (MGA), hierarchical component models second-order models...
  • hlib

  • Referenced in 69 articles [sw04080]
  • HLib is a library for hierarchical matrices that was written by Lars Grasedyck and Steffen ... library contains functions for H- and H2-matrix arithmetics, the treatment of partial differential equations...
  • HLIBCov

  • Referenced in 3 articles [sw22365]
  • HLIBCov: Parallel Hierarchical Matrix Approximation of Large Covariance Matrices and Likelihoods with Applications in Parameter...
  • HierNMF2

  • Referenced in 4 articles [sw34622]
  • Hierarchical rank-2 nonnegative matrix factorization (HierNMF2) is an unsupervised algorithm for large-scale document ... Park, Fast rank-2 nonnegative matrix factorization for hierarchical document clustering...
  • STARS-H

  • Referenced in 1 article [sw30066]
  • Hierarchical computations. It provides a hierarchical matrix market in order to benchmark performance of various ... libraries for hierarchical matrix compressions and computations (including itself). Why hierarchical matrices? Because such matrices ... assessing accuracy and performance of hierarchical matrix libraries on a given hardware architecture environment. STARS...
  • GOFMM

  • Referenced in 1 article [sw38979]
  • hierarchical low-rank approximation, ”compression,” of an arbitrary dense symmetric positive definite (SPD) matrix ... even N time, where N is the matrix size. Compression requires NlogN storage and work ... scheme belongs to the family of hierarchical matrix approximation methods. In particular, it generalizes ... shared-memory parallel scheme for hierarchical matrix computations that reduces synchronization barriers. We present results...
  • elsA

  • Referenced in 35 articles [sw07602]
  • central space discretization with scalar or matrix artificial dissipation on multi-block structured meshes ... achieved in elsA through patched grid, Hierarchical Mesh Refinement and Chimera techniques. The discrete equations...
  • LOBPCG

  • Referenced in 32 articles [sw09638]
  • where standard approaches to the solution of matrix eigenvalue problems fail due to the exponentially ... format. In this paper, we use the hierarchical Tucker decomposition to develop a low-rank...
  • hmglib

  • Referenced in 1 article [sw32904]
  • entirely GPU-based implementation of the hierarchical (H) matrix approach. H matrices approximate specific dense...
  • Secator

  • Referenced in 2 articles [sw12606]
  • principle of an ascending hierarchical method using a distance matrix based on a multiple alignment...
  • NUMATH

  • Referenced in 5 articles [sw00639]
  • methods of numerical mathematics. With remarks on matrix processor variants A general description ... hierarchical structure: problem oriented solvers, method oriented primary routines and basic modulus for matrix...
  • HASP

  • Referenced in 4 articles [sw23782]
  • hierarchical algorithm for making sparse matrices sparser. If A is the (sparse) coefficient matrix ... pass approach to solve SP called the Hierarchical Algorithm. In this paper we report...
  • HEWN

  • Referenced in 3 articles [sw02189]
  • vertices is hierarchical and each edge is attached by a guiding matrix that reflects those...
  • gRbase

  • Referenced in 12 articles [sw10198]
  • standard matrix or a sparse matrix). Some graph algorithms are: (i) maximum cardinality search ... testing for conditional independence. gRbase illustrates how hierarchical log-linear models (hllm) may be implemented...
  • OXBench

  • Referenced in 7 articles [sw22988]
  • algorithms may be judged. RESULTS: The simple hierarchical multiple alignment algorithm, AMPS, performed as well ... CLUSTALW once the PAM250 pair-score matrix was replaced by a BLOSUM series matrix. AMPS...
  • OMA

  • Referenced in 3 articles [sw34207]
  • Matrix (OMA) algorithm 2.0: more robust to asymmetric evolutionary rates and more scalable hierarchical orthologous...