• CLUMPP

  • Referenced in 3 articles [sw08998]
  • into populations on the basis of multilocus genotypes is informative in a variety of settings ... BAPS, STRUCTURE and TESS, individual multilocus genotypes are partitioned over a set of clusters, often...
  • FastMap

  • Referenced in 3 articles [sw20452]
  • measures the association between transcript expression and genotype in order to find genomic locations likely ... both gene expression and high-density genotype data has improved our ability to perform eQTL...
  • PonyGE2

  • Referenced in 3 articles [sw21388]
  • formal grammar is used in the genotype to phenotype mapping process. PonyGE2 is an open ... workout. As well as providing the characteristic genotype to phenotype mapping of GE, a search...
  • MASTOR

  • Referenced in 2 articles [sw23134]
  • some individuals to have missing data (phenotypes, genotypes, or covariates). When some individuals ... phenotype and covariate information who are not genotyped but have genotyped relatives in the sample ... association analysis because of the dependence among genotypes. Similarly, individuals who are genotyped...
  • SIMLA

  • Referenced in 4 articles [sw00862]
  • used to generate disease phenotype and marker genotype data in three-generational pedigrees of user...
  • GENECLASS2

  • Referenced in 4 articles [sw09060]
  • individuals, on the basis of multilocus genotype data. In addition to traditional assignment aims...
  • Geva

  • Referenced in 4 articles [sw21390]
  • group. As well as providing the characteristic genotype-phenotype mapper of GE a search algorithm...
  • genetics

  • Referenced in 4 articles [sw24196]
  • handling genetic data. Includes classes to represent genotypes and haplotypes at single markers...
  • PhyloWGS

  • Referenced in 4 articles [sw26926]
  • more tumor samples to reconstruct complete genotypes of these subpopulations based on variant allele frequencies...
  • Circos

  • Referenced in 4 articles [sw27740]
  • sequence alignments, hybridization arrays, genome mapping, and genotyping studies. Circos uses a circular ideogram layout...
  • SNVMix

  • Referenced in 4 articles [sw29569]
  • ovarian cancer RNASeq datasets with matched genotyping arrays and a human breast cancer genome sequenced...
  • SABER

  • Referenced in 4 articles [sw33848]
  • structure. Input files are typical and include genotype data from ancestral and admixed individuals, global...
  • PedGenie

  • Referenced in 4 articles [sw35514]
  • statistics. Single locus at a time, composite genotype tests, and haplotype analyses...
  • Tree-k-RHC

  • Referenced in 2 articles [sw20976]
  • rule-based) methods for inferring haplotypes from genotypes on a pedigree have been studied extensively ... thus be used to infer haplotypes from genotypes on large tree pedigrees efficiently in practice...
  • Geneland

  • Referenced in 3 articles [sw11444]
  • make use of georeferenced individual multilocus genotypes for the inference of the number of populations...
  • QTL Express

  • Referenced in 3 articles [sw24835]
  • marker map, trait data and marker genotypes allows mapping of single or multiple...
  • fastSTRUCTURE

  • Referenced in 3 articles [sw25207]
  • algorithms on simulated data and illustrate using genotype data from the CEPH-Human Genome Diversity...
  • hapassoc

  • Referenced in 3 articles [sw25734]
  • accommodate uncertain haplotype phase and handle missing genotypes at some SNPs...
  • Crossbow

  • Referenced in 3 articles [sw34367]
  • read aligner, and SoapSNP, and an accurate genotyper. These tools are combined in an automatic...
  • GENOTYPE

  • Referenced in 1 article [sw02115]
  • GENOTYPE - a pure functional array language. Genotype is a universal programming language that ... viewed as invariants of transformations of data. Genotype is universal, being a language that describes ... invariants of transformations of data. Genotype is a pure functional language ... imperative features and side effects. Genotype is an intrinsically parallel language: arrays permit the manipulation...