• Haploview

  • Referenced in 22 articles [sw11870]
  • particularly in the context of medical genetic association studies, is becoming a routine research activity...
  • Rassoc

  • Referenced in 12 articles [sw25402]
  • Robust Tests in Case-Control Genetic Association Studies in R. The case-control study ... analysis of case-control genetic association studies. The asymptotically optimal CATT can be used when ... CATT. Two robust tests, MAX3 and the genetic model selection (GMS), were recently proposed. Their ... been fully studied or involve multiple integrations. In this article, we study how components...
  • MaCH

  • Referenced in 7 articles [sw17274]
  • haplotypes and unobserved genotypes. Genome-wide association studies (GWAS) can identify common alleles that contribute ... large number of SNPs assessed in each study, the effects of most common SNPs must ... used to facilitate comparison of results across studies as well as meta-analyses of GWAS ... analyses but also increases power of genetic association studies. We show that genotype imputation...
  • BhGLM

  • Referenced in 3 articles [sw10342]
  • graphically displaying the results, and for genetic association studies and QTL mapping. The Bayesian hierarchical ... functions are particularly useful for complicated genetic data analysis ... example, QTL mapping in experimental crosses, genetic association studies for rare and common variants, prediction...
  • pi-MASS

  • Referenced in 16 articles [sw17249]
  • genome-wide association studies measure hundreds of thousands, or millions, of genetic variants (SNPs ... regression. Characteristic features of genome-wide association studies include the following: (i) a focus primarily...
  • SNPinfo

  • Referenced in 3 articles [sw17360]
  • information into functional SNP selection for genetic association studies. We have developed...
  • GemTools

  • Referenced in 2 articles [sw33844]
  • each cluster is relatively homogeneous. For genetic association studies, GemTools matches cases and controls based...
  • MASTOR

  • Referenced in 2 articles [sw23134]
  • Human Genetics 92(5):625-666: Genetic association studies often sample individuals with known familial ... mixed-model, retrospective score test for genetic association with a quantitative trait. MASTOR achieves high ... sample can still contribute to the association analysis because of the dependence among genotypes. Similarly ... feasible and practical in genome-wide association studies. We apply MASTOR to data on high...
  • TAGster

  • Referenced in 2 articles [sw11869]
  • single or multiple populations, Summary: Genetic association studies increasingly rely on the use of linkage...
  • AssocTests

  • Referenced in 1 article [sw16007]
  • through searching for the eigenvectors in genetic association studies), PCoC (a procedure for correcting ... distance regression (a procedure for detecting the association between a distance matrix and some independent ... procedure for testing for the association between a genetic variant and a non-normal distributed ... models), which are commonly used in genetic association studies...
  • ReliefF

  • Referenced in 1 article [sw33465]
  • detecting and characterizing epistasis in genetic association studies. We provide a general overview ... that have greatly improved its power for genetic analysis. We end with a few examples...
  • MetaGenyo

  • Referenced in 1 article [sw29562]
  • tool for meta-analysis in Genetic Association Studies (GAS). MetaGenyo implements a complete and comprehensive ... covering Hardy-Weinberg test, statistical association for different genetic models, analysis of heterogeneity, testing...
  • varbvs

  • Referenced in 1 article [sw21809]
  • regression, and its accuracy in genetic association studies” (P. Carbonetto & M. Stephens...
  • SNPStats

  • Referenced in 3 articles [sw20043]
  • designed from a genetic epidemiology point of view to analyze association studies. Main capabilities include...
  • HAPLORE

  • Referenced in 2 articles [sw36930]
  • algorithm, can be used in genetic linkage and association studies. Availability: The program...
  • SecureMA

  • Referenced in 0 articles [sw34353]
  • SecureMA: secure meta-analysis for genetic association studies. SecureMA is a secure framework for performing ... multi-site genetic association studies across large consortia, without violating privacy/confidentiality of individual participants...
  • dmGWAS

  • Referenced in 3 articles [sw29291]
  • genome-wide association studies (GWAS) is how to detect genetic signals beyond single markers/genes ... GWAS association data with that from prior-knowledge databases and proteome studies has recently gained...
  • TPOT-MDR

  • Referenced in 1 article [sw18807]
  • complex diseases in genome-wide association studies using genetic programming. Machine learning has been gaining...
  • IMPUTE

  • Referenced in 11 articles [sw14375]
  • estimating (”imputing”) unobserved genotypes in SNP association studies. The program is designed to work seamlessly ... genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that...
  • SNPs3D

  • Referenced in 5 articles [sw30035]
  • selection for association studies. Background: The relationship between disease susceptibility and genetic variation is complex...