• RegulonDB

• Referenced in 53 articles [sw25948]
• origin of their effectors and by gene ontology class. We have now computational predictions ... accessed through overviews of correlations about gene regulation. RegulonDB associated original literature, together with more...

• iLoc-Virus

• Referenced in 31 articles [sw22417]
• label scale” and by hybridizing the gene ontology information with the sequential evolution information...

• FatiGO

• Referenced in 21 articles [sw12318]
• tool for finding significant associations of Gene ontology terms with groups of genes. Summary ... simple but powerful procedure to extract Gene Ontology (GO) terms that are significantly over...

• pLoc-mEuk

• Referenced in 30 articles [sw24440]
• mEuk” by extracting the key GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...

• GOstat

• Referenced in 20 articles [sw10975]
• GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Summary: Modern experimental techniques ... genes in this list. The Gene-Ontology (GO) database provides a useful tool to annotate ... functions of a large number of genes. Here, we introduce a tool that utilizes this...

• pLoc-mPlant

• Referenced in 27 articles [sw25191]
• mPlant” by extracting the optimal GO (Gene Ontology) information into the Chou’s general PseAAC...

• Plant-mPLoc

• Referenced in 27 articles [sw22435]
• mPLoc” is developed by integrating the gene ontology information, functional domain information, and sequential evolutionary...

• Hum-PLoc

• Referenced in 24 articles [sw26863]
• samples are expressed by hybridizing the gene ontology (GO) database and amphiphilic pseudo amino acid...

• Euk-PLoc

• Referenced in 24 articles [sw22420]
• hybridizing the information derived from the gene ontology database and amphiphilic pseudo amino acid composition...

• BiNGO

• Referenced in 14 articles [sw13896]
• Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks. Summary: The Biological ... Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene ... Ontology (GO) terms are significantly overrepresented in a set of genes. BiNGO can be used...

• pLoc-mVirus

• Referenced in 23 articles [sw24439]
• mVirus” by extracting the optimal GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...

• pLoc-mGneg

• Referenced in 23 articles [sw25190]
• Gram-negative bacterial proteins by deep gene ontology learning via general PseAAC. Information...

• pLoc-mHum

• Referenced in 20 articles [sw27661]
• mHum’ by extracting the crucial GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...

• I-TASSER

• Referenced in 18 articles [sw17207]
• binding sites, Enzyme Commission numbers and Gene Ontology terms. An estimate of accuracy...

• iLoc-Gpos

• Referenced in 18 articles [sw22418]
• well as hybridizing the information of gene ontology and the sequential evolution information, a novel...

• GO-TermFinder

• Referenced in 12 articles [sw10921]
• TermFinder-open source software for accessing gene ontology terms associated with a list of genes ... object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing...

• GeneRank

• Referenced in 17 articles [sw27064]
• network structure derived from gene annotations (gene ontologies) or expression profile correlations. Using both simulated ... algorithm offers an improved ranking of genes compared to pure expression change rankings. Conclusion...

• SMART

• Referenced in 16 articles [sw17187]
• ability to query SMART by Gene Ontology terms, improved structure database searching and batch retrieval...

• PseAAC-General

• Referenced in 16 articles [sw22430]
• general PseAAC, such as the gene ontology mode, the functional domain mode, and the sequential...

• Gneg-mPLoc

• Referenced in 16 articles [sw25879]
• proteins. By incorporating the information of gene ontology, functional domain, and sequential evolution...