• CODA

  • Referenced in 358 articles [sw04290]
  • package coda: Output analysis and diagnostics for MCMC , Output analysis and diagnostics for Markov Chain ... diagnostic tests of convergence to the equilibrium distribution of the Markov chain...
  • APBS

  • Referenced in 95 articles [sw05766]
  • APBS is a software package for the numerical solution of the Poisson-Boltzmann equation ... determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design...
  • RootSolve

  • Referenced in 20 articles [sw08339]
  • package rootSolve: Nonlinear root finding, equilibrium and steady-state analysis of ordinary differential equations. Routines...
  • BFO

  • Referenced in 12 articles [sw36962]
  • optimizer for nonlinear bound-constrained optimization and equilibrium computations with continuous and discrete variables ... derivative-free optimization package. It is also applicable to multilevel equilibrium- or constrained-type problems...
  • PCMBase

  • Referenced in 3 articles [sw26114]
  • branch is multivariate normal. We demonstrate the package’s possibilities on the now standard, multitrait ... novel multivariate punctuated equilibrium model. The package can handle trees of various types (e.g. ultrametric...
  • PyEquIon

  • Referenced in 1 article [sw36797]
  • PyEquIon: A Python Package For Automatic Speciation Calculations of Aqueous Electrolyte Solutions. In several industrial ... aqueous electrolyte solutions is crucial. Electrolyte equilibrium calculation contributes with the design and optimization ... calculation of aqueous electrolyte equilibrium. The package takes as inputs the feed components ... topic. The package can be used by researchers to readily identify the equilibrium reactions...
  • ESTRAUS

  • Referenced in 4 articles [sw14606]
  • ESTRAUS: a computer package for solving supply-demand equilibrium problems on multimodal urban transportation networks...
  • ABAKO/RAPCAL

  • Referenced in 4 articles [sw20547]
  • plasmas using the computational package ABAKO/RAPCAL. Non-local thermodynamic equilibrium (NLTE) conditions are universal ... this work is presented a versatile computational package, named ABAKO/RAPCAL, to calculate the populations...
  • phyclust

  • Referenced in 1 article [sw15971]
  • package phyclust. Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain model-based approach ... from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient...
  • SUPCRT92

  • Referenced in 4 articles [sw13444]
  • package facilitates practical application of these recent theories, equations, and data to define equilibrium constraints...
  • Cervus

  • Referenced in 5 articles [sw17810]
  • Cervus is the leading software package for parentage analysis in plant and animal populations ... other words that they are in linkage equilibrium...
  • hwde

  • Referenced in 1 article [sw24195]
  • package hwde: Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci...
  • eqtools

  • Referenced in 2 articles [sw22295]
  • eqtools is a Python package for working with magnetic equilibrium reconstructions from magnetic plasma confinement...
  • HardyWeinberg

  • Referenced in 2 articles [sw24194]
  • package HardyWeinberg: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium. Contains tools for exploring Hardy ... Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) for bi and multi-allelic genetic marker data ... allelic variants are included in the package, as well as functions for power computation ... simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers...
  • MIXKIP/RAPCAL

  • Referenced in 1 article [sw40496]
  • MIXKIP/RAPCAL: a computational package for integrated simulations of large-scale atomic kinetics and radiation transport ... local thermodynamic equilibrium plasmas. In many of the plasmas generated in many fields ... computational package to perform 1D and 2D large-scale non-local thermodynamic equilibrium atomic kinetics ... plasmas. This package includes different modules that allow simulations of non-equilibrium plasmas under different...
  • BifTools

  • Referenced in 2 articles [sw41741]
  • BifTools is a package for symbolic and numeric bifurcation analysis of equilibrium points in dynamical...
  • MT3DMS

  • Referenced in 22 articles [sw08693]
  • MT3DMS. As with MODFLOW, GMS provides several ”packages” which simplify user-input. This data ... dispersion, diffusion, and some chemical reactions including equilibrium-controlled linear or non-linear sorption...
  • PyBerny

  • Referenced in 1 article [sw33442]
  • input, and returns a new equilibrium structure estimate. The package implements a single optimization algorithm...
  • WulffPack

  • Referenced in 2 articles [sw31375]
  • Python package for making Wulff constructions, typically for finding equilibrium shapes of nanoparticles. WulffPack constructs...
  • QuSpin

  • Referenced in 3 articles [sw23897]
  • QuSpin, SciPostPhys.2.1.003 -- an open-source Python package for exact diagonalization and quantum dynamics of arbitrary ... equilibrium Bose-Fermi mixtures. This easily accessible and user-friendly package can serve various purposes...