
CODA
 Referenced in 358 articles
[sw04290]
 package coda: Output analysis and diagnostics for MCMC , Output analysis and diagnostics for Markov Chain ... diagnostic tests of convergence to the equilibrium distribution of the Markov chain...

APBS
 Referenced in 95 articles
[sw05766]
 APBS is a software package for the numerical solution of the PoissonBoltzmann equation ... determine ligandprotein and proteinprotein equilibrium binding constants and aid in rational drug design...

RootSolve
 Referenced in 20 articles
[sw08339]
 package rootSolve: Nonlinear root finding, equilibrium and steadystate analysis of ordinary differential equations. Routines...

BFO
 Referenced in 12 articles
[sw36962]
 optimizer for nonlinear boundconstrained optimization and equilibrium computations with continuous and discrete variables ... derivativefree optimization package. It is also applicable to multilevel equilibrium or constrainedtype problems...

PCMBase
 Referenced in 3 articles
[sw26114]
 branch is multivariate normal. We demonstrate the package’s possibilities on the now standard, multitrait ... novel multivariate punctuated equilibrium model. The package can handle trees of various types (e.g. ultrametric...

PyEquIon
 Referenced in 1 article
[sw36797]
 PyEquIon: A Python Package For Automatic Speciation Calculations of Aqueous Electrolyte Solutions. In several industrial ... aqueous electrolyte solutions is crucial. Electrolyte equilibrium calculation contributes with the design and optimization ... calculation of aqueous electrolyte equilibrium. The package takes as inputs the feed components ... topic. The package can be used by researchers to readily identify the equilibrium reactions...

ESTRAUS
 Referenced in 4 articles
[sw14606]
 ESTRAUS: a computer package for solving supplydemand equilibrium problems on multimodal urban transportation networks...

ABAKO/RAPCAL
 Referenced in 4 articles
[sw20547]
 plasmas using the computational package ABAKO/RAPCAL. Nonlocal thermodynamic equilibrium (NLTE) conditions are universal ... this work is presented a versatile computational package, named ABAKO/RAPCAL, to calculate the populations...

phyclust
 Referenced in 1 article
[sw15971]
 package phyclust. Phylogenetic clustering (phyloclustering) is an evolutionary Continuous Time Markov Chain modelbased approach ... from molecular data without assuming linkage equilibrium. The package phyclust (Chen 2011) provides a convenient...

SUPCRT92
 Referenced in 4 articles
[sw13444]
 package facilitates practical application of these recent theories, equations, and data to define equilibrium constraints...

Cervus
 Referenced in 5 articles
[sw17810]
 Cervus is the leading software package for parentage analysis in plant and animal populations ... other words that they are in linkage equilibrium...

hwde
 Referenced in 1 article
[sw24195]
 package hwde: Models and Tests for Departure from HardyWeinberg Equilibrium and Independence Between Loci...

eqtools
 Referenced in 2 articles
[sw22295]
 eqtools is a Python package for working with magnetic equilibrium reconstructions from magnetic plasma confinement...

HardyWeinberg
 Referenced in 2 articles
[sw24194]
 package HardyWeinberg: Statistical Tests and Graphics for HardyWeinberg Equilibrium. Contains tools for exploring Hardy ... Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) for bi and multiallelic genetic marker data ... allelic variants are included in the package, as well as functions for power computation ... simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers...

MIXKIP/RAPCAL
 Referenced in 1 article
[sw40496]
 MIXKIP/RAPCAL: a computational package for integrated simulations of largescale atomic kinetics and radiation transport ... local thermodynamic equilibrium plasmas. In many of the plasmas generated in many fields ... computational package to perform 1D and 2D largescale nonlocal thermodynamic equilibrium atomic kinetics ... plasmas. This package includes different modules that allow simulations of nonequilibrium plasmas under different...

BifTools
 Referenced in 2 articles
[sw41741]
 BifTools is a package for symbolic and numeric bifurcation analysis of equilibrium points in dynamical...

MT3DMS
 Referenced in 22 articles
[sw08693]
 MT3DMS. As with MODFLOW, GMS provides several ”packages” which simplify userinput. This data ... dispersion, diffusion, and some chemical reactions including equilibriumcontrolled linear or nonlinear sorption...

PyBerny
 Referenced in 1 article
[sw33442]
 input, and returns a new equilibrium structure estimate. The package implements a single optimization algorithm...

WulffPack
 Referenced in 2 articles
[sw31375]
 Python package for making Wulff constructions, typically for finding equilibrium shapes of nanoparticles. WulffPack constructs...

QuSpin
 Referenced in 3 articles
[sw23897]
 QuSpin, SciPostPhys.2.1.003  an opensource Python package for exact diagonalization and quantum dynamics of arbitrary ... equilibrium BoseFermi mixtures. This easily accessible and userfriendly package can serve various purposes...