• CHARMM

  • Referenced in 120 articles [sw05953]
  • Mechanics). CHARMM models the dynamics and mechanics of macromolecular systems using empirical and mixed empirical/quantum ... structure and dynamics of large molecules. It performs free energy calculations of mutations and drug...
  • SATzilla

  • Referenced in 99 articles [sw06281]
  • single ”dominant” SAT solver; instead, different solvers perform best on different instances. Rather than following ... that use so-called empirical hardness models to choose among their constituent solvers. This approach ... score in a competition). The excellent performance of SATzilla was independently verified...
  • MINION

  • Referenced in 50 articles [sw10176]
  • size increases. Empirical results on standard benchmarks show orders of magnitude performance gains over state ... input language based on the common constraint modelling device of matrix models. Focussing on matrix...
  • LibBi

  • Referenced in 15 articles [sw19384]
  • prescribed modelling language, and LibBi demonstrated by performing inference with them. Empirical results are presented...
  • AdaBoost.RT

  • Referenced in 14 articles [sw08520]
  • single M5 model tree. The preliminary empirical comparisons show higher performance of AdaBoost.RT for most...
  • SUNNY

  • Referenced in 12 articles [sw31800]
  • order to compute -- without learning an explicit model -- a schedule of them for solving ... Constraint Satisfaction Problem (CSP). Motivated by the performance reached by SUNNY vs. different simulations ... Empirical tests conducted on exhaustive benchmarks of MiniZinc models show that the actual performance...
  • GAS

  • Referenced in 6 articles [sw17726]
  • empirical application considering Dow Jones Index constituents investigates the VaR forecasting performance of GAS models...
  • NLPLIB

  • Referenced in 30 articles [sw03199]
  • base and problems defined in the AMPL modeling language can be solved. TOMLAB and NLPLIB ... approxi mate sums of exponential functions to empirical data and for global optimization. We present ... preliminary test results, which show very good performance for the NLPLIB TB solvers...
  • Parkway

  • Referenced in 7 articles [sw12863]
  • empirical results on hypergraphs taken from the VLSI and performance modelling application domains. Further, partition...
  • TerpreT

  • Referenced in 2 articles [sw29483]
  • TerpreT by developing several interpreter models and performing an empirical comparison between alternative inference algorithms...
  • OUOUCIR

  • Referenced in 1 article [sw34465]
  • Simulation studies show that new models perform well. Empirical analysis using several data sets from ... validity and utility of the new models. The relevant data sets and R scripts developed...
  • Voom

  • Referenced in 19 articles [sw14009]
  • read counts. New normal linear modeling strategies are presented for analyzing read counts from ... observation and enters these into the limma empirical Bayes analysis pipeline. This opens access ... microarrays. Simulation studies show that voom performs as well or better than count-based ... case studies illustrate the use of linear modeling and gene set testing methods...
  • reccv

  • Referenced in 36 articles [sw26388]
  • nonparametric regression, where the data are modelled as observations of a signal contaminated with additive ... from a wide range of classical and empirical Bayes methods treating either individual or blocks ... estimator, we use various criteria to measure performance in finite sample situations. Insight into...
  • iRSpot-GAEnsC

  • Referenced in 4 articles [sw25197]
  • genetic algorithm (GA). The performance of GA-based ensemble model is quite promising compared ... model. iRSpot-GAEnsC has achieved 84.46 % accuracy. The empirical results revealed that the performance ... anticipated that the proposed model might be helpful for research community, academia and for drug...
  • Medlda

  • Referenced in 13 articles [sw11723]
  • likelihood learning of directed or undirected topic models when supervising side information is available. Efficient ... parameter estimation are derived and extensive empirical studies on several real data sets are also ... prediction performance; and 3) be more efficient than existing supervised topic models, especially for classification...
  • PSOFuzzySVM-TMH

  • Referenced in 3 articles [sw27664]
  • various levels, the performance of the PSOFuzzySVM-TMH model is assessed through 10-fold cross ... empirical results reveal that the proposed framework PSOFuzzySVM-TMH outperforms in terms of classification performance ... datasets. It is ascertained that the proposed model might be a useful and high throughput...
  • VOLNA

  • Referenced in 19 articles [sw06829]
  • inundation. A novel tool for tsunami wave modeling is presented. This tool has the potential ... majority of tsunami codes use semi-empirical techniques at this stage, which are not always ... with analytical solutions and experimental data are performed. Finally, the main conclusions are outlined...
  • qualV

  • Referenced in 3 articles [sw25853]
  • ecological models differ, to some extent, more from measured data than from empirical knowledge. Existing ... sometimes cause an underestimation of the performance of models due to time shifts, accelerations...
  • OKVAR-Boost

  • Referenced in 3 articles [sw24063]
  • perform the tasks of parameter learning and network inference for the proposed model. Specifically ... Vector AutoRegressive model (OKVAR) is trained on a random subnetwork. The final model ... consists of an ensemble of such models. The empirical estimation of the ensemble model ... estimation of the network structure. The performance of the proposed algorithm is first evaluated...
  • BSFM

  • Referenced in 2 articles [sw00093]
  • Bayesian stochastic frontier models. .. A C++ program is described which performs Monte-Carlo iterative calculations ... posterior distribution of β. Results of empirical data analysis are presented for a linear model...