• InterViewer

  • Referenced in 29 articles [sw00443]
  • InterViewer: Dynamic visualization of protein-protein interactions From the perspective of graph drawing, a protein...
  • BioGRID

  • Referenced in 48 articles [sw17422]
  • variety of file formats. User-customized graphs with embedded protein, gene and interaction attributes ... visualization system called Osprey that is dynamically linked to the BioGRID...
  • MXNet

  • Referenced in 36 articles [sw20940]
  • productivity. At its core, MXNet contains a dynamic dependency scheduler that automatically parallelizes both symbolic ... imperative operations on the fly. A graph optimization layer on top of that makes symbolic...
  • Ginsim

  • Referenced in 29 articles [sw09090]
  • regulatory graph, as well as a simulation engine to compute the corresponding qualitative dynamical behaviour...
  • Laplacians.jl

  • Referenced in 2 articles [sw41227]
  • local clustering, and optimization on graphs. All graphs are represented by sparse adjacency matrices. This ... algebraic tasks. It does not handle dynamic graphs. It would be very slow to implement ... dynamic graphs this...
  • CLEAN

  • Referenced in 58 articles [sw01346]
  • language Clean among which it’s Term Graph Rewriting semantics. Of particular importance for practical ... system with both static as well as dynamic typing. Expressions, which are dynamically typed...
  • GeneScout

  • Referenced in 7 articles [sw31815]
  • analyzing the paths in the graph G. A dynamic programming algorithm is used to find...
  • AToM3

  • Referenced in 32 articles [sw10092]
  • information found in a Formalism Transformation Graph (FTG), proposed by the authors ... formalisms commonly used in the simulation of dynamical systems, as well as to generate custom ... corresponding formalism. AToM 3 relies on graph rewriting techniques and graph grammars to perform...
  • HashGraph

  • Referenced in 2 articles [sw35095]
  • tables that uses concepts taken from sparse graph representations--hence the name HashGraph. We show ... static inputs, though recent progress with dynamic graph data structures suggest that HashGraph might...
  • QSWalk.m

  • Referenced in 4 articles [sw27610]
  • Walks (QSWs) on arbitrary directed and weighted graphs. QSWs are a generalization of continuous time ... walks that incorporate both coherent and incoherent dynamics and as such, include both quantum walks ... quantum walks along directed graph edges. The dynamics of QSWs are expressed using the Lindblad ... density matrices. For a QSW on a graph of vertices, we have a sparse superoperator...
  • iJADE Surveillant

  • Referenced in 2 articles [sw24856]
  • face identification based on the Elastic Graph Dynamic Link Model. To conform to the current...
  • GraphStream

  • Referenced in 3 articles [sw38267]
  • library that focuses on the dynamics aspects of graphs. Its main focus ... modeling of dynamic interaction networks of various sizes. The goal of the library ... provide a way to represent graphs and work on it. To this end, GraphStream proposes...
  • CGV

  • Referenced in 3 articles [sw19315]
  • graph visualization. To support different visualization tasks, view ensembles can be created dynamically with ... framework. Several novel techniques, including enhanced dynamic filtering, graph lenses, and edge-based navigation...
  • GDSCalc

  • Referenced in 1 article [sw28036]
  • Based Application for Evaluating Discrete Graph Dynamical Systems. Discrete dynamical systems are used to model ... system as vertices of a graph, and the pairwise interactions between agents as edges. Agents ... give insights into fundamental behaviors of other dynamical systems ... this paper, we describe a discrete graph dynamical systems (GDSs) application called GDSCalc for computing...
  • Valgrind

  • Referenced in 62 articles [sw04420]
  • Valgrind is an instrumentation framework for building dynamic analysis tools. There are Valgrind tools that ... cache and branch-prediction profiler, a call-graph generating cache and branch-prediction profiler...
  • DyNet

  • Referenced in 3 articles [sw18695]
  • implementing neural network models based on dynamic declaration of network structure. In the static declaration ... TensorFlow, the user first defines a computation graph (a symbolic representation of the computation ... derivatives. In DyNet’s dynamic declaration strategy, computation graph construction is mostly transparent, being implicitly ... challenge with dynamic declaration is that because the symbolic computation graph is defined anew...
  • Parsl

  • Referenced in 3 articles [sw28682]
  • constructs allow Parsl to construct a dynamic dependency graph of components that it can then...
  • Lugares

  • Referenced in 19 articles [sw09861]
  • Lugares for obtaining the equations and graphs of plane loci. Lugares is a Windows program ... written in Prolog that offers a standard dynamic geometry environment and uses the symbolic capabilities...
  • VPM

  • Referenced in 11 articles [sw07364]
  • precise static and dynamic semantics (based on a refinement calculus and graph transformation) where...
  • RDyn

  • Referenced in 1 article [sw28444]
  • RDyn: graph benchmark handling community dynamics. Graph models provide an understanding of the dynamics ... evolution; as a direct consequence, synthesizing graphs having controlled topology and planted partitions has been ... ignored by benchmarks proposed so far: community dynamics. As time goes by network communities rise...