
EMD
 Referenced in 243 articles
[sw14902]
 described in [1]. The EMD computes the distance between two distributions, which are represented...

Metro
 Referenced in 79 articles
[sw07731]
 surface sampling and pointtosurface distance computation...

Graphs
 Referenced in 109 articles
[sw12277]
 graph). A socalled preprocessing algorithm may compute certain information (a data structure or index ... step, applications may ask shortestpath or distance queries, which should be answered as fast ... reachability queries; and theoretical computer scientists analyze distance oracles and sparse spanners. Related problems ... compact routing and distance labeling schemes in networking and distributed computing and for metric embeddings...

ape
 Referenced in 63 articles
[sw04569]
 analyses, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading...

PhyloNetwork
 Referenced in 28 articles
[sw28216]
 comparative analysis of phylogenetic networks by computing distances between them or aligning them. Results...

CPT
 Referenced in 16 articles
[sw22560]
 Euclidean distance to the triangle mesh. In addition, it can compute the closest point ... gradient of the distance. The distance, etc., are computed to within a specified distance ... geometry and polyhedron scan conversion. The computed distance is accurate to within machine precision ... grid points for which the distance is computed and the size of the mesh. Thus...

GraphBase
 Referenced in 138 articles
[sw01555]
 GraphBase is a freely available collection of computer programs and data useful for testing ... distances between cities, inputoutput statistics of the US economy, college football scores, computational logic...

DiFi
 Referenced in 11 articles
[sw14142]
 DiFi: Fast 3D distance field computation using graphics hardware. We present an algorithm for fast ... computation of discretized 3D distance fields using graphics hardware. Given a set of primitives ... distance metric, our algorithm computes the distance field for each slice of a uniform spatial ... have used our algorithm to compute distance fields of large models composed of tens...

LDDMM
 Referenced in 75 articles
[sw06286]
 assign metric distances on the space of anatomical images in Computational Anatomy thereby allowing...

SplitsTree
 Referenced in 32 articles
[sw12234]
 also supports a number of distances transformations, the computation of parsimony splits, spectral analysis...

DistMesh
 Referenced in 310 articles
[sw12766]
 range of applications, including scientific computing and computer graphics. An unstructured simplex mesh requires ... geometry is described implicitly by its distance function. In addition to being much shorter...

flexclust
 Referenced in 28 articles
[sw04583]
 centroids cluster analysis supporting arbitrary distance measures and centroid computation. Further cluster methods include hard...

MUSCLE
 Referenced in 75 articles
[sw13193]
 high throughput. We describe MUSCLE, a new computer program for creating multiple alignments of protein ... sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using ... current desktop computer. The MUSCLE program, source code and PREFAB test data are freely available...

CGAL
 Referenced in 402 articles
[sw00118]
 projects using CGAL web page. The Computational Geometry Algorithms Library (CGAL), offers data structures ... placement of streamlines), shape analysis, fitting, and distances (smallest enclosing sphere of points or spheres...

dtw
 Referenced in 23 articles
[sw07323]
 algorithms in R. DTW computes the optimal (least cumulative distance) alignment between points...

TraMineR
 Referenced in 7 articles
[sw10507]
 describing and rendering sequences, for computing distances between sequences with different metrics among which optimal...

FluTE
 Referenced in 10 articles
[sw31627]
 Stochastic Influenza Epidemic Simulation Model. Mathematical and computer models of epidemics have contributed ... them using pharmaceutical interventions and social distancing measures. Computer simulation models play an essential role...

ASTRID
 Referenced in 6 articles
[sw23620]
 runs in two phases: a distance matrix is computed from the input gene trees ... distancebased method is used to compute a species tree from the distance matrix...

Ellipsoidal Toolbox
 Referenced in 38 articles
[sw10826]
 ellipsoids and hyperplanes of arbitrary dimensions. It computes the external and internal ellipsoidal approximations ... intersections of ellipsoids with halfspaces and polytopes; distances between ellipsoids, between ellipsoids and hyperplanes, between ... given subspaces. Ellipsoidal methods are used to compute forward and backward reach sets of continuous...

GUAVA
 Referenced in 22 articles
[sw07729]
 GUAVA is a GAP package for computing with codes. GUAVA can construct unrestricted (nonlinear ... minumim distance or covering radius) quickly. Limited ability to compute algebraic geometric codes. Computer algebra...