• EMD

  • Referenced in 243 articles [sw14902]
  • described in [1]. The EMD computes the distance between two distributions, which are represented...
  • Metro

  • Referenced in 79 articles [sw07731]
  • surface sampling and point-to-surface distance computation...
  • Graphs

  • Referenced in 109 articles [sw12277]
  • graph). A so-called preprocessing algorithm may compute certain information (a data structure or index ... step, applications may ask shortest-path or distance queries, which should be answered as fast ... reachability queries; and theoretical computer scientists analyze distance oracles and sparse spanners. Related problems ... compact routing and distance labeling schemes in networking and distributed computing and for metric embeddings...
  • ape

  • Referenced in 63 articles [sw04569]
  • analyses, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading...
  • PhyloNetwork

  • Referenced in 28 articles [sw28216]
  • comparative analysis of phylogenetic networks by computing distances between them or aligning them. Results...
  • CPT

  • Referenced in 16 articles [sw22560]
  • Euclidean distance to the triangle mesh. In addition, it can compute the closest point ... gradient of the distance. The distance, etc., are computed to within a specified distance ... geometry and polyhedron scan conversion. The computed distance is accurate to within machine precision ... grid points for which the distance is computed and the size of the mesh. Thus...
  • GraphBase

  • Referenced in 138 articles [sw01555]
  • GraphBase is a freely available collection of computer programs and data useful for testing ... distances between cities, input-output statistics of the US economy, college football scores, computational logic...
  • DiFi

  • Referenced in 11 articles [sw14142]
  • DiFi: Fast 3D distance field computation using graphics hardware. We present an algorithm for fast ... computation of discretized 3D distance fields using graphics hardware. Given a set of primitives ... distance metric, our algorithm computes the distance field for each slice of a uniform spatial ... have used our algorithm to compute distance fields of large models composed of tens...
  • LDDMM

  • Referenced in 75 articles [sw06286]
  • assign metric distances on the space of anatomical images in Computational Anatomy thereby allowing...
  • SplitsTree

  • Referenced in 32 articles [sw12234]
  • also supports a number of distances transformations, the computation of parsimony splits, spectral analysis...
  • DistMesh

  • Referenced in 310 articles [sw12766]
  • range of applications, including scientific computing and computer graphics. An unstructured simplex mesh requires ... geometry is described implicitly by its distance function. In addition to being much shorter...
  • flexclust

  • Referenced in 28 articles [sw04583]
  • centroids cluster analysis supporting arbitrary distance measures and centroid computation. Further cluster methods include hard...
  • MUSCLE

  • Referenced in 75 articles [sw13193]
  • high throughput. We describe MUSCLE, a new computer program for creating multiple alignments of protein ... sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using ... current desktop computer. The MUSCLE program, source code and PREFAB test data are freely available...
  • CGAL

  • Referenced in 402 articles [sw00118]
  • projects using CGAL web page. The Computational Geometry Algorithms Library (CGAL), offers data structures ... placement of streamlines), shape analysis, fitting, and distances (smallest enclosing sphere of points or spheres...
  • dtw

  • Referenced in 23 articles [sw07323]
  • algorithms in R. DTW computes the optimal (least cumulative distance) alignment between points...
  • TraMineR

  • Referenced in 7 articles [sw10507]
  • describing and rendering sequences, for computing distances between sequences with different metrics among which optimal...
  • FluTE

  • Referenced in 10 articles [sw31627]
  • Stochastic Influenza Epidemic Simulation Model. Mathematical and computer models of epidemics have contributed ... them using pharmaceutical interventions and social distancing measures. Computer simulation models play an essential role...
  • ASTRID

  • Referenced in 6 articles [sw23620]
  • runs in two phases: a distance matrix is computed from the input gene trees ... distance-based method is used to compute a species tree from the distance matrix...
  • Ellipsoidal Toolbox

  • Referenced in 38 articles [sw10826]
  • ellipsoids and hyperplanes of arbitrary dimensions. It computes the external and internal ellipsoidal approximations ... intersections of ellipsoids with halfspaces and polytopes; distances between ellipsoids, between ellipsoids and hyperplanes, between ... given subspaces. Ellipsoidal methods are used to compute forward and backward reach sets of continuous...
  • GUAVA

  • Referenced in 22 articles [sw07729]
  • GUAVA is a GAP package for computing with codes. GUAVA can construct unrestricted (non-linear ... minumim distance or covering radius) quickly. Limited ability to compute algebraic geometric codes. Computer algebra...